Subcellular Localization
min:
: max
Winner_takes_all: golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33279 | Canola | golgi, vacuole | 94.4 | 90.84 |
| CDY16307 | Canola | golgi, vacuole | 80.39 | 77.57 |
| CDY33280 | Canola | golgi, vacuole | 79.83 | 77.03 |
| CDX73720 | Canola | golgi, vacuole | 79.27 | 76.08 |
| AT3G51440.1 | Thale cress | golgi, vacuole | 77.03 | 74.12 |
| AT3G51430.1 | Thale cress | golgi, vacuole | 76.19 | 73.32 |
| AT3G51420.1 | Thale cress | golgi, vacuole | 75.07 | 72.43 |
| AT3G51450.1 | Thale cress | vacuole | 75.07 | 72.24 |
| CDX78005 | Canola | vacuole | 76.19 | 65.7 |
| PGSC0003DMT400003995 | Potato | golgi, vacuole | 51.26 | 48.93 |
| VIT_04s0210g00060.t01 | Wine grape | cytosol, mitochondrion | 36.41 | 48.33 |
| Solyc02g082900.2.1 | Tomato | vacuole | 50.14 | 48.25 |
| VIT_04s0210g00090.t01 | Wine grape | mitochondrion, vacuole | 25.21 | 45.92 |
| KRH69688 | Soybean | golgi, vacuole | 47.06 | 45.78 |
| VIT_04s0210g00120.t01 | Wine grape | vacuole | 48.46 | 45.65 |
| VIT_04s0210g00080.t01 | Wine grape | vacuole | 48.18 | 45.38 |
| TraesCS1A01G203800.1 | Wheat | cytosol, plastid, vacuole | 30.81 | 45.08 |
| Os10t0543500-01 | Rice | plasma membrane | 31.93 | 44.71 |
| TraesCS1B01G217600.1 | Wheat | extracellular, golgi, vacuole | 45.38 | 44.14 |
| KRH07935 | Soybean | endoplasmic reticulum | 46.5 | 43.92 |
| HORVU1Hr1G052450.8 | Barley | extracellular, golgi, vacuole | 45.1 | 43.75 |
| VIT_04s0210g00130.t01 | Wine grape | plasma membrane, vacuole | 35.01 | 43.71 |
| TraesCS1D01G207200.2 | Wheat | extracellular, golgi, vacuole | 44.54 | 43.32 |
| VIT_04s0210g00050.t01 | Wine grape | plastid | 50.42 | 43.17 |
| VIT_04s0210g00100.t01 | Wine grape | cytosol | 21.01 | 42.86 |
| GSMUA_AchrUn_... | Banana | plastid | 27.17 | 38.8 |
| KRH69689 | Soybean | plastid | 42.86 | 38.64 |
| OQU92210 | Sorghum | golgi, plastid, vacuole | 44.26 | 35.67 |
| VIT_04s0210g00040.t01 | Wine grape | cytosol, peroxisome, vacuole | 33.33 | 31.73 |
| CDX95058 | Canola | vacuole | 26.33 | 25.13 |
| CDX93560 | Canola | vacuole | 27.17 | 24.68 |
| CDX72079 | Canola | vacuole | 22.69 | 24.55 |
| CDX92388 | Canola | vacuole | 24.93 | 24.32 |
| CDY47728 | Canola | vacuole | 21.57 | 23.55 |
| CDX73037 | Canola | vacuole | 21.57 | 23.48 |
| CDY16615 | Canola | endoplasmic reticulum, extracellular, vacuole | 25.77 | 23.29 |
| CDX96505 | Canola | vacuole | 21.29 | 23.17 |
| CDY47729 | Canola | vacuole | 21.01 | 23.08 |
| CDY45863 | Canola | vacuole | 21.01 | 23.08 |
| CDY45861 | Canola | vacuole | 21.29 | 23.03 |
| CDY22515 | Canola | vacuole | 22.41 | 22.92 |
| CDY06143 | Canola | vacuole | 24.65 | 22.92 |
| VIT_04s0210g00030.t01 | Wine grape | vacuole | 49.58 | 22.9 |
| CDY23858 | Canola | vacuole | 23.53 | 22.46 |
| CDX73039 | Canola | vacuole | 20.45 | 22.39 |
| CDY35420 | Canola | vacuole | 21.85 | 22.29 |
| CDX96506 | Canola | vacuole | 20.17 | 22.15 |
| CDY70367 | Canola | cytosol | 16.81 | 21.9 |
| CDY66189 | Canola | vacuole | 18.21 | 21.89 |
| CDX79944 | Canola | vacuole | 22.97 | 21.87 |
| CDX73038 | Canola | vacuole | 19.89 | 21.85 |
| CDX96507 | Canola | vacuole | 19.89 | 21.78 |
| CDX71901 | Canola | extracellular, golgi, vacuole | 24.37 | 21.59 |
| CDX89027 | Canola | endoplasmic reticulum, vacuole | 24.37 | 21.53 |
| CDY05993 | Canola | endoplasmic reticulum, golgi, vacuole | 23.81 | 21.09 |
| CDX68204 | Canola | vacuole | 19.33 | 21.04 |
| CDY22517 | Canola | vacuole | 21.57 | 20.87 |
| CDY66188 | Canola | vacuole | 19.05 | 20.73 |
| CDX72080 | Canola | endoplasmic reticulum, extracellular, golgi | 21.29 | 20.6 |
| CDY23857 | Canola | vacuole | 21.29 | 20.6 |
| CDX79943 | Canola | vacuole | 21.29 | 20.6 |
| CDY06144 | Canola | vacuole | 21.01 | 20.33 |
| CDY39351 | Canola | extracellular, plasma membrane, vacuole | 19.61 | 20.06 |
| CDX77108 | Canola | vacuole | 20.73 | 20.0 |
| CDX67673 | Canola | vacuole | 20.73 | 20.0 |
| CDY30558 | Canola | vacuole | 20.73 | 19.84 |
| CDY54042 | Canola | vacuole | 20.45 | 19.73 |
| CDY30959 | Canola | extracellular, golgi, vacuole | 20.45 | 19.73 |
| CDY30963 | Canola | vacuole | 20.17 | 19.15 |
| CDY30962 | Canola | vacuole | 20.17 | 19.15 |
| CDX76033 | Canola | vacuole | 19.89 | 18.88 |
| CDX76030 | Canola | endoplasmic reticulum, golgi, vacuole | 19.61 | 18.62 |
| CDY47397 | Canola | vacuole | 14.85 | 18.15 |
Protein Annotations
| Gene3D:2.120.10.30 | MapMan:50.4.3 | InterPro:6-blade_b-propeller_TolB-like | GO:A0A078FT73 | UniProt:A0A078FT73 | EnsemblPlants:CDY16306 |
| ProteinID:CDY16306 | ProteinID:CDY16306.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0016844 | EnsemblPlantsGene:GSBRNA2T00090809001 | InterPro:IPR011042 | PFAM:PF03088 | PANTHER:PTHR10426 |
| PANTHER:PTHR10426:SF58 | SUPFAM:SSF63829 | InterPro:Strictosidine_synth_cons-reg | InterPro:Strictosidine_synthase | UniParc:UPI0004EECFB7 | SEG:seg |
Description
BnaC01g23410DBnaC01g23410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FT73]
Coordinates
chrLK032062:-:556510..557997
Molecular Weight (calculated)
40102.2 Da
IEP (calculated)
6.722
GRAVY (calculated)
-0.020
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLLFFSRRF LIFSTIIPFI ASIALYRVDT FDPSHLPADA LVYSTTSIPP LVNDQLLTGA EFIGVGLLNK PEDIAYDRDS GLIYTGCVDG WVKRVKVMES
101: ANDSVVENWV NTGGRPLGLA FGLHGEVIVA DAYKGMFNIS DDGRKTELLT DEAEGVRFKL TDAVAVGDNG VLYFTDASYK YDYSQSSFDV LEGKPHGRLM
201: SFNPTTRTTR VLLKDLYFAN GVSIRRCSKY YISEERVEVF IQSLPGYPDN IRYDGDGHYW IAMPTGVTTL WKLSMRYPLL RKVTAMVAKW GFNLMFAEDA
301: GVLQVDFDGN PIAFYHDHKI THLTTGVKIG KYLYCGSLLH SRILRLDLLK YPAQKSL
101: ANDSVVENWV NTGGRPLGLA FGLHGEVIVA DAYKGMFNIS DDGRKTELLT DEAEGVRFKL TDAVAVGDNG VLYFTDASYK YDYSQSSFDV LEGKPHGRLM
201: SFNPTTRTTR VLLKDLYFAN GVSIRRCSKY YISEERVEVF IQSLPGYPDN IRYDGDGHYW IAMPTGVTTL WKLSMRYPLL RKVTAMVAKW GFNLMFAEDA
301: GVLQVDFDGN PIAFYHDHKI THLTTGVKIG KYLYCGSLLH SRILRLDLLK YPAQKSL
001: MPVFLSSRFL FFCIIVPLLI SITLYQLDTF DPAHHPADSL ISSTASIPPL INERFLTGAE FIGVGLLNSP EDIAYHEDSG FIYTGCVDGW VKRVKVAESV
101: NDSLVEDLVN TGGRPLGIAF GIHGEVIVAD AYKGLLNISG DGKKTELLTE EADGVRFKLP DAVTVADNGV LYFTDGSYKY NLHQFSFDIL EGKPHGRLMS
201: FDPTTKVTRV LLRDLYFANG VSLSPDQTHL VFCETPIRRC SKYYINGGRV ELFIQGLPGY PDNIRYDGDG HYWIAMPSGV TTLWKLSMKY PFLRKITAMA
301: AKYGYEPMFM ENAGVLQVDL DGNPIAYYHD QALSHITTGV KIGNYLYCGS LWHSHILRLD LLKYPAQNKK L
101: NDSLVEDLVN TGGRPLGIAF GIHGEVIVAD AYKGLLNISG DGKKTELLTE EADGVRFKLP DAVTVADNGV LYFTDGSYKY NLHQFSFDIL EGKPHGRLMS
201: FDPTTKVTRV LLRDLYFANG VSLSPDQTHL VFCETPIRRC SKYYINGGRV ELFIQGLPGY PDNIRYDGDG HYWIAMPSGV TTLWKLSMKY PFLRKITAMA
301: AKYGYEPMFM ENAGVLQVDL DGNPIAYYHD QALSHITTGV KIGNYLYCGS LWHSHILRLD LLKYPAQNKK L
Arabidopsis Description
SSL6Protein STRICTOSIDINE SYNTHASE-LIKE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD05]
SUBAcon: [golgi,vacuole]
SUBAcon: [golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.