Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- vacuole 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0010g03800.t01 | |
| VIT_09s0002g03770.t01 | |
| VIT_10s0003g01830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G51450.1 | VIT_01s0010g03800.t01 | AT1G27300.1 | 21798944 |
| AT3G51450.1 | VIT_09s0002g03770.t01 | AT3G16310.1 | 21798944 |
| AT3G51450.1 | VIT_10s0003g01830.t01 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0210g00060.t01 | Wine grape | cytosol, mitochondrion | 48.44 | 75.09 |
| VIT_04s0210g00120.t01 | Wine grape | vacuole | 66.19 | 72.82 |
| VIT_04s0210g00080.t01 | Wine grape | vacuole | 65.95 | 72.56 |
| VIT_04s0210g00090.t01 | Wine grape | mitochondrion, vacuole | 34.05 | 72.45 |
| VIT_04s0210g00100.t01 | Wine grape | cytosol | 29.5 | 70.29 |
| VIT_04s0210g00130.t01 | Wine grape | plasma membrane, vacuole | 46.76 | 68.18 |
| PGSC0003DMT400003995 | Potato | golgi, vacuole | 54.2 | 60.43 |
| Solyc02g082900.2.1 | Tomato | vacuole | 52.28 | 58.76 |
| VIT_04s0210g00040.t01 | Wine grape | cytosol, peroxisome, vacuole | 51.56 | 57.33 |
| CDX73720 | Canola | golgi, vacuole | 48.92 | 54.84 |
| AT3G51430.1 | Thale cress | golgi, vacuole | 48.68 | 54.72 |
| AT3G51450.1 | Thale cress | vacuole | 48.44 | 54.45 |
| Os10t0543500-01 | Rice | plasma membrane | 33.09 | 54.12 |
| CDY33280 | Canola | golgi, vacuole | 47.0 | 52.97 |
| CDY16307 | Canola | golgi, vacuole | 47.0 | 52.97 |
| AT3G51440.1 | Thale cress | golgi, vacuole | 47.0 | 52.83 |
| GSMUA_AchrUn_... | Banana | plastid | 31.65 | 52.8 |
| CDY33279 | Canola | golgi, vacuole | 46.52 | 52.29 |
| Bra038899.1-P | Field mustard | golgi, vacuole | 46.52 | 52.29 |
| KRH69688 | Soybean | golgi, vacuole | 45.56 | 51.77 |
| AT3G51420.1 | Thale cress | golgi, vacuole | 45.8 | 51.62 |
| CDY16306 | Canola | golgi, vacuole | 43.17 | 50.42 |
| TraesCS1A01G203800.1 | Wheat | cytosol, plastid, vacuole | 29.5 | 50.41 |
| VIT_04s0210g00030.t01 | Wine grape | vacuole | 92.81 | 50.06 |
| KRH07935 | Soybean | endoplasmic reticulum | 45.32 | 50.0 |
| HORVU1Hr1G052450.8 | Barley | extracellular, golgi, vacuole | 43.88 | 49.73 |
| TraesCS1B01G217600.1 | Wheat | extracellular, golgi, vacuole | 43.65 | 49.59 |
| TraesCS1D01G207200.2 | Wheat | extracellular, golgi, vacuole | 43.41 | 49.32 |
| Bra038898.1-P | Field mustard | golgi, vacuole | 46.04 | 48.36 |
| Bra036798.1-P | Field mustard | vacuole | 47.48 | 47.83 |
| CDX78005 | Canola | vacuole | 47.24 | 47.58 |
| KRH69689 | Soybean | plastid | 45.08 | 47.47 |
| OQU92210 | Sorghum | golgi, plastid, vacuole | 47.24 | 44.47 |
| VIT_11s0016g00860.t01 | Wine grape | golgi, vacuole | 30.22 | 34.52 |
| VIT_11s0016g00880.t01 | Wine grape | plastid | 29.26 | 33.15 |
| VIT_13s0074g00070.t01 | Wine grape | vacuole | 19.66 | 29.93 |
| VIT_10s0042g00030.t01 | Wine grape | vacuole | 19.18 | 29.3 |
| VIT_10s0042g00010.t01 | Wine grape | vacuole | 21.82 | 28.89 |
| VIT_06s0009g00850.t01 | Wine grape | cytosol | 23.98 | 28.49 |
| VIT_00s0575g00020.t01 | Wine grape | vacuole | 21.82 | 28.26 |
| VIT_00s0575g00010.t01 | Wine grape | vacuole | 21.1 | 28.21 |
| VIT_10s0071g00020.t01 | Wine grape | vacuole | 20.86 | 28.16 |
| VIT_10s0042g00020.t01 | Wine grape | vacuole | 21.58 | 27.95 |
| VIT_10s0042g00050.t01 | Wine grape | vacuole | 21.58 | 27.95 |
| VIT_13s0074g00080.t01 | Wine grape | vacuole | 21.34 | 27.64 |
| VIT_10s0071g00010.t01 | Wine grape | vacuole | 21.1 | 27.33 |
| VIT_11s0016g00870.t01 | Wine grape | plasma membrane, vacuole | 29.74 | 26.9 |
| VIT_10s0071g00250.t01 | Wine grape | vacuole | 21.34 | 26.18 |
| VIT_08s0007g05370.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 22.06 | 24.86 |
| VIT_17s0000g04580.t01 | Wine grape | extracellular, vacuole | 10.79 | 24.86 |
| VIT_08s0007g05360.t01 | Wine grape | vacuole | 22.3 | 24.6 |
| VIT_17s0000g04600.t01 | Wine grape | vacuole | 19.66 | 23.91 |
| VIT_17s0000g04610.t01 | Wine grape | vacuole | 20.38 | 23.16 |
| VIT_05s0102g00880.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 22.06 | 22.66 |
| VIT_17s0000g04590.t01 | Wine grape | endoplasmic reticulum, peroxisome, vacuole | 19.42 | 17.88 |
Protein Annotations
| EntrezGene:100249006 | wikigene:100249006 | Gene3D:2.120.10.30 | MapMan:50.4.3 | InterPro:6-blade_b-propeller_TolB-like | EMBL:AM464697 |
| ProteinID:CAN70331 | ProteinID:CAN70331.1 | ProteinID:CBI38400 | ProteinID:CBI38400.3 | ncoils:Coil | UniProt:D7U6N0 |
| EMBL:FN596531 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016788 | GO:GO:0016844 | InterPro:IPR011042 | EntrezGene:LOC100249006 |
| wikigene:LOC100249006 | PFAM:PF03088 | PANTHER:PTHR10426 | PANTHER:PTHR10426:SF58 | SUPFAM:SSF63829 | InterPro:Strictosidine_synth_cons-reg |
| InterPro:Strictosidine_synthase | TIGR:TC63387 | TMHMM:TMhelix | UniParc:UPI0001BE5180 | ArrayExpress:VIT_04s0210g00050 | EnsemblPlantsGene:VIT_04s0210g00050 |
| EnsemblPlants:VIT_04s0210g00050.t01 | unigene:Vvi.1119 | RefSeq:XP_002268467 | RefSeq:XP_002268467.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr4:+:20445939..20454256
Molecular Weight (calculated)
46262.6 Da
IEP (calculated)
5.284
GRAVY (calculated)
-0.047
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHGFNNILS NNESRCLSLL LPSSVESNRV SAAPMAKSKP SDPNTTRKSS SWSLALLISI LTPVAAAIFL YQLDSFDPAS LPTHVFSQEP MSVPRINSRL
101: LHESEMIGLG KLLGPEDIAY DTNSHLIYTG CADGWIKKVT LNDSAVNSVV HDWAFTGGRP LGVVLGRAGE VLVADADKGL LEISEDGVVK LLTDEAEGIG
201: FKLTDAVDVA VDGMIYFTDA SYKYSLKDFI WDILEGRPHG RLLSFDPSTQ ETKVLVRDLY FANGVVVSPD QTFLIFCETF MKRCSKYYIQ GERKGSVDKF
301: IDNLPGMPDN ILYDGEGHYW IGLATGYNDL WDLALKYPSI RKIMAIMERF IGRPEFEKNG GVLAIDLEGK PIAHYYDPKL SLMSSGIKID KYLYCGFVVK
401: PYMIRLDLDQ HAARTTL
101: LHESEMIGLG KLLGPEDIAY DTNSHLIYTG CADGWIKKVT LNDSAVNSVV HDWAFTGGRP LGVVLGRAGE VLVADADKGL LEISEDGVVK LLTDEAEGIG
201: FKLTDAVDVA VDGMIYFTDA SYKYSLKDFI WDILEGRPHG RLLSFDPSTQ ETKVLVRDLY FANGVVVSPD QTFLIFCETF MKRCSKYYIQ GERKGSVDKF
301: IDNLPGMPDN ILYDGEGHYW IGLATGYNDL WDLALKYPSI RKIMAIMERF IGRPEFEKNG GVLAIDLEGK PIAHYYDPKL SLMSSGIKID KYLYCGFVVK
401: PYMIRLDLDQ HAARTTL
001: MPMFYSSRFL FFFTIVPLLV SIALYQLDTF DPAPVPSEAY ASSTTSIPPL ISDKYLTGAE FIGVGLLDKP EDIAYHQDSN LIYTGCIDGW VKRVSVHDSA
101: NDSVVEDWVN TGGRPLGIAF GVHGEVIVAD AYKGLLNISG DGKKTELLTD QAEGVKFKLT DVVAVADNGV LYFTDASYKY TLHQVKFDIL EGKPHGRLMS
201: FDPTTRVTRV LLKDLYFANG VSMSPDQTHL IFCETPMRRC SKYYINEERV EVFIQGLPGY PDNIRYDGDG HYWIAMVSGA STLWRLSMKY PFLRKITAIA
301: AKYGVELMFM KNAGVLQVDL DGNPIAYYHD QRLSHITTGI KIGNYLYCGN ILHSYIIRLD LLKYPAQKKK L
101: NDSVVEDWVN TGGRPLGIAF GVHGEVIVAD AYKGLLNISG DGKKTELLTD QAEGVKFKLT DVVAVADNGV LYFTDASYKY TLHQVKFDIL EGKPHGRLMS
201: FDPTTRVTRV LLKDLYFANG VSMSPDQTHL IFCETPMRRC SKYYINEERV EVFIQGLPGY PDNIRYDGDG HYWIAMVSGA STLWRLSMKY PFLRKITAIA
301: AKYGVELMFM KNAGVLQVDL DGNPIAYYHD QRLSHITTGI KIGNYLYCGN ILHSYIIRLD LLKYPAQKKK L
Arabidopsis Description
SSL5Protein STRICTOSIDINE SYNTHASE-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAZ7]
SUBAcon: [golgi,vacuole]
SUBAcon: [golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.