Factsheet for Bra038899.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 6
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	cytosol, vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012567.1-P
Bra013361.1-P
Bra027174.1-P
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51450.1	Bra030034.1-P	AT1G27300.1	21798944
AT3G51450.1	Bra032817.1-P	AT1G27300.1	21798944
AT3G51450.1	Bra027174.1-P	AT3G16310.1	21798944
AT3G51450.1	Bra012567.1-P	AT4G19030.1	21798944
AT3G51450.1	Bra013361.1-P	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33279	Canola	golgi, vacuole	99.19	99.19
AT3G51440.1	Thale cress	golgi, vacuole	78.17	78.17
AT3G51430.1	Thale cress	golgi, vacuole	77.63	77.63
AT3G51420.1	Thale cress	golgi, vacuole	76.55	76.76
AT3G51450.1	Thale cress	vacuole	76.55	76.55
Bra038898.1-P	Field mustard	golgi, vacuole	78.98	73.8
Bra036798.1-P	Field mustard	vacuole	78.17	70.05
VIT_04s0210g00060.t01	Wine grape	cytosol, mitochondrion	37.47	51.67
PGSC0003DMT400003995	Potato	golgi, vacuole	52.02	51.6
Solyc02g082900.2.1	Tomato	vacuole	51.21	51.21
Os10t0543500-01	Rice	plasma membrane	33.96	49.41
TraesCS1A01G203800.1	Wheat	cytosol, plastid, vacuole	32.34	49.18
VIT_04s0210g00120.t01	Wine grape	vacuole	49.33	48.28
KRH69688	Soybean	golgi, vacuole	47.71	48.23
VIT_04s0210g00080.t01	Wine grape	vacuole	49.06	48.02
VIT_04s0210g00100.t01	Wine grape	cytosol	22.64	48.0
VIT_04s0210g00090.t01	Wine grape	mitochondrion, vacuole	24.8	46.94
VIT_04s0210g00130.t01	Wine grape	plasma membrane, vacuole	36.12	46.85
VIT_04s0210g00050.t01	Wine grape	plastid	52.29	46.52
TraesCS1B01G217600.1	Wheat	extracellular, golgi, vacuole	45.82	46.32
HORVU1Hr1G052450.8	Barley	extracellular, golgi, vacuole	45.82	46.2
TraesCS1D01G207200.2	Wheat	extracellular, golgi, vacuole	45.28	45.78
KRH07935	Soybean	endoplasmic reticulum	46.63	45.77
GSMUA_AchrUn_...	Banana	plastid	29.11	43.2
KRH69689	Soybean	plastid	43.13	40.4
OQU92210	Sorghum	golgi, plastid, vacuole	45.55	38.15
VIT_04s0210g00040.t01	Wine grape	cytosol, peroxisome, vacuole	34.77	34.4
Bra018623.1-P	Field mustard	cytosol	26.42	27.92
Bra008125.1-P	Field mustard	cytosol, peroxisome, vacuole	16.71	26.38
Bra008126.1-P	Field mustard	vacuole	21.83	24.77
Bra007294.1-P	Field mustard	vacuole	24.8	24.6
VIT_04s0210g00030.t01	Wine grape	vacuole	50.94	24.45
Bra007457.1-P	Field mustard	golgi, vacuole	26.95	24.21
Bra014536.1-P	Field mustard	vacuole	26.95	24.15
Bra003820.1-P	Field mustard	vacuole	20.75	23.84
Bra002383.1-P	Field mustard	vacuole	25.34	23.8
Bra008127.1-P	Field mustard	vacuole	21.02	23.78
Bra000222.1-P	Field mustard	cytosol	22.1	23.77
Bra004613.1-P	Field mustard	vacuole	23.99	23.73
Bra008124.1-P	Field mustard	vacuole	20.75	23.69
Bra015943.1-P	Field mustard	vacuole	20.22	23.01
Bra004614.1-P	Field mustard	vacuole	22.1	22.22
Bra000223.1-P	Field mustard	vacuole	22.1	22.22
Bra007293.1-P	Field mustard	vacuole	21.83	21.95
Bra014652.1-P	Field mustard	extracellular, golgi, vacuole	21.56	21.62
Bra034344.1-P	Field mustard	vacuole	21.02	21.08
Bra003263.1-P	Field mustard	vacuole	20.75	20.81
Bra014655.1-P	Field mustard	endoplasmic reticulum, golgi	19.95	19.42
Bra015944.1-P	Field mustard	vacuole	18.87	11.73

Protein Annotations

EnsemblPlants:Bra038899.1	EnsemblPlants:Bra038899.1-P	EnsemblPlantsGene:Bra038899	Gene3D:2.120.10.30	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016844	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042
InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	PANTHER:PTHR10426	PANTHER:PTHR10426:SF58	PFAM:PF03088	SEG:seg
SUPFAM:SSF63829	UniParc:UPI00025453B3	UniProt:M4FCT0	MapMan:50.4.3	:	:

Description

AT3G51430 (E=3e-164) YLS2 | YLS2; strictosidine synthase

Coordinates

chrA01:-:12670493..12671863

Molecular Weight (calculated)

41716.2 Da

IEP (calculated)

6.423

GRAVY (calculated)

-0.033

Length

371 amino acids

Sequence
(BLAST)

001: MPLLFFSRRF LIFSTIIPFI ASITLYRLDT FDPSHLPADA LVYSTTSIPP LVNDQLLTGA EFIGVGLLNK PEDIAYDRDS GLIYTGCLDG WVKRVKALES
101: CNDSVVEDWV NTGGRPLGLA FGLHGEVIVA DAYKGLLNIS DDGRKTELLT DEAEGVRFKL TDAVAVGDNG VLYFTDASYK YDYSQASFDF LEGKPHGRLM
201: SFNPTTRTTR VLLKDLYFAN GISMSPDQTH LIFCETPVRR CSKYYINEER VEVFIQSLPG YPDNIRYDGD GHYWIAIPKG VTTLWKLSMR YPLLRKVTAM
301: VAKWGFNLMF AEDAGVLQVD LDGNPIAFYH DHKISHLTTG VKIGKYLYCG SLLHSRILRL DLLKYPAQKS L

Best Arabidopsis Sequence Match ( AT3G51430.1 )
(BLAST)

001: MPMFYSSRFL FFFTIVPLLV SIALYQLDTF DPAPVPSEAY ASSTTSIPPL ISDKYLTGAE FIGVGLLDKP EDIAYHQDSN LIYTGCIDGW VKRVSVHDSA
101: NDSVVEDWVN TGGRPLGIAF GVHGEVIVAD AYKGLLNISG DGKKTELLTD QAEGVKFKLT DVVAVADNGV LYFTDASYKY TLHQVKFDIL EGKPHGRLMS
201: FDPTTRVTRV LLKDLYFANG VSMSPDQTHL IFCETPMRRC SKYYINEERV EVFIQGLPGY PDNIRYDGDG HYWIAMVSGA STLWRLSMKY PFLRKITAIA
301: AKYGVELMFM KNAGVLQVDL DGNPIAYYHD QRLSHITTGI KIGNYLYCGN ILHSYIIRLD LLKYPAQKKK L

Arabidopsis Description

SSL5Protein STRICTOSIDINE SYNTHASE-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAZ7]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.