Factsheet for Bra000223.1-P

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

cytosol 1
extracellular 4
endoplasmic reticulum 4
vacuole 7
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70367	Canola	cytosol	73.98	99.64
Bra004614.1-P	Field mustard	vacuole	89.97	89.97
AT2G41300.1	Thale cress	vacuole	77.78	72.84
Bra014655.1-P	Field mustard	endoplasmic reticulum, golgi	69.11	66.93
Bra014652.1-P	Field mustard	extracellular, golgi, vacuole	65.85	65.68
Bra034344.1-P	Field mustard	vacuole	64.77	64.59
Bra003263.1-P	Field mustard	vacuole	63.96	63.78
Bra007293.1-P	Field mustard	vacuole	61.52	61.52
Bra007294.1-P	Field mustard	vacuole	46.34	45.72
KRH66809	Soybean	endoplasmic reticulum	45.26	45.01
KRG95135	Soybean	endoplasmic reticulum	44.72	44.47
Bra018623.1-P	Field mustard	cytosol	41.46	43.59
Bra002383.1-P	Field mustard	vacuole	42.28	39.49
Bra000222.1-P	Field mustard	cytosol	32.79	35.07
Bra007457.1-P	Field mustard	golgi, vacuole	39.02	34.87
Bra014536.1-P	Field mustard	vacuole	38.75	34.54
Bra008126.1-P	Field mustard	vacuole	30.08	33.95
Bra004613.1-P	Field mustard	vacuole	34.42	33.87
Bra008125.1-P	Field mustard	cytosol, peroxisome, vacuole	21.41	33.62
Bra008127.1-P	Field mustard	vacuole	29.0	32.62
Bra003820.1-P	Field mustard	vacuole	27.37	31.27
Bra015943.1-P	Field mustard	vacuole	27.37	30.98
Bra008124.1-P	Field mustard	vacuole	26.56	30.15
Bra038899.1-P	Field mustard	golgi, vacuole	22.22	22.1
Bra038898.1-P	Field mustard	golgi, vacuole	22.22	20.65
Bra036798.1-P	Field mustard	vacuole	21.14	18.84
Bra015944.1-P	Field mustard	vacuole	27.1	16.75

Protein Annotations

Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	EnsemblPlantsGene:Bra000223	EnsemblPlants:Bra000223.1	EnsemblPlants:Bra000223.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0016020	GO:GO:0016021	GO:GO:0016844	InterPro:IPR011042	UniProt:M4C7P5	PFAM:PF03088
PANTHER:PTHR10426	PANTHER:PTHR10426:SF24	SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	TMHMM:TMhelix
UniParc:UPI0002540346	SEG:seg	:	:	:	:

Description

AT2G41300 (E=7e-173) | strictosidine synthase

Coordinates

chrA03:-:9987608..9989831

Molecular Weight (calculated)

41310.9 Da

IEP (calculated)

8.130

GRAVY (calculated)

-0.170

Length

369 amino acids

Sequence
(BLAST)

001: MPISRKFWTW AVATAIIAVL VVFVGPSIIG PESIVGSKNV LTTAKMIPLP VDGPESLDWD PRGEGPYVGV TDGRILKWRG SDLGWVEFAY SSPHRGNCSS
101: HKVEPACGRP LGLSFEKKTG DLYFCDGYFG VMKVGPKGGL AEKVVDEVEG QKIMFANQMD IDEEEDVFYF NDSSDTYHFG DVFFAFLCGE KTGRAIRYDK
201: KSKEAKVIMD RLHLPNGLAI SKDGSFVLSC EVPTQLVHRY WAKGPKSGTR DVFAKLPGYA DNIRRTEKGD FWVALHSKRT PFSRFSLMHP WIGKFFMKTL
301: KMDLLVFLFE GGKPHAVAVK LCGKTGKVLE VLEDSEGKNM KFISEVQERD GKLWFGSVFL PSVWVLEHQ

Best Arabidopsis Sequence Match ( AT2G41300.1 )
(BLAST)

001: MESLLLIAYA FLYLFLLSHE AEYKINADQS ENSNVGRFGG NYGRLGRLSG SIHHWTGEYR GLEKRPNHSE DNPPSRGWTG EPGLDPRGEG PYVGVTDGRI
101: LKWSGEDLGW IEFAYSSPHR KNCSSHKVEP ACGRPLGLSF EKKSGDLYFC DGYLGVMKVG PKGGLAEKVV DEVEGQKVMF ANQMDIDEEE DAIYFNDSSD
201: TYHFGDVFYA FLCGEKTGRA IRYDKKTKEA KVIMDRLHFP NGLALSIDGS FVLSCEVPTQ LVHRYWAKGP NAGTRDIFAK LPGYADNIRR TETGDFWVAL
301: HSKKTPFSRL SMIHPWVGKF FIKTLKMELL VFLFEGGKPH AVAVKLSGKT GEIMEILEDS EGKNMKFISE VQERDGRLWF GSVFLPSVWV LDRQ

Arabidopsis Description

SSL1Protein STRICTOSIDINE SYNTHASE-LIKE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4IJZ6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.