Factsheet for Bra014655.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

cytosol 1
extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027174.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57010.1	Bra027174.1-P	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76030	Canola	endoplasmic reticulum, golgi, vacuole	98.69	100.0
AT3G57010.1	Thale cress	extracellular, golgi, vacuole	80.05	81.12
Bra000223.1-P	Field mustard	vacuole	66.93	69.11
Bra034344.1-P	Field mustard	vacuole	66.67	68.65
Bra014652.1-P	Field mustard	extracellular, golgi, vacuole	66.67	68.65
Bra004614.1-P	Field mustard	vacuole	65.35	67.48
Bra003263.1-P	Field mustard	vacuole	64.3	66.22
Bra007293.1-P	Field mustard	vacuole	63.25	65.31
KRG95135	Soybean	endoplasmic reticulum	43.83	45.01
KRH66809	Soybean	endoplasmic reticulum	43.57	44.74
Bra007294.1-P	Field mustard	vacuole	43.04	43.85
Bra018623.1-P	Field mustard	cytosol	40.16	43.59
Bra002383.1-P	Field mustard	vacuole	39.9	38.48
Bra000222.1-P	Field mustard	cytosol	33.33	36.81
Bra004613.1-P	Field mustard	vacuole	33.86	34.4
Bra008127.1-P	Field mustard	vacuole	29.4	34.15
Bra008125.1-P	Field mustard	cytosol, peroxisome, vacuole	21.0	34.04
Bra008126.1-P	Field mustard	vacuole	28.87	33.64
Bra007457.1-P	Field mustard	golgi, vacuole	35.43	32.69
Bra014536.1-P	Field mustard	vacuole	35.17	32.37
Bra008124.1-P	Field mustard	vacuole	27.03	31.69
Bra015943.1-P	Field mustard	vacuole	27.03	31.6
Bra003820.1-P	Field mustard	vacuole	26.77	31.58
Bra038899.1-P	Field mustard	golgi, vacuole	19.42	19.95
Bra038898.1-P	Field mustard	golgi, vacuole	19.95	19.14
Bra036798.1-P	Field mustard	vacuole	19.42	17.87
Bra015944.1-P	Field mustard	vacuole	26.51	16.92

Protein Annotations

Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	EnsemblPlantsGene:Bra014655	EnsemblPlants:Bra014655.1	EnsemblPlants:Bra014655.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016020	GO:GO:0016021
GO:GO:0016844	InterPro:IPR011042	UniProt:M4DDT6	PFAM:PF03088	PANTHER:PTHR10426	PANTHER:PTHR10426:SF24
SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	TMHMM:TMhelix	UniParc:UPI00025445A3	:

Description

AT3G57010 (E=5e-184) | strictosidine synthase family protein

Coordinates

chrA04:+:2042837..2044516

Molecular Weight (calculated)

42846.4 Da

IEP (calculated)

5.805

GRAVY (calculated)

-0.176

Length

381 amino acids

Sequence
(BLAST)

001: MPISERVLKQ VAAFPVVLAI VCYFFWPSII APDLLKGTKD VLQVAKTIPL PGDGPESLEF DSQGEGPYVG VTDGRILKWR GEELGWVEFA WVEFAYSSPH
101: RDNCSRHKVV PSCGRPLGLS FHKETGDLYF CDGYFGVMKV GPEGGLAELV VDEAEGHKVM FANQMDIDQE EDVFYFNDSS DKYHFEQVFY VYMSGEKTGR
201: VIRYDMKKKE ATVIMDKLHL PNGLALSKDG SFVLTCESGT NTIHRIWVKG PKAGTNEVFA KIPGPMDNIR RTPTGDFWVA LHSKDSLFTR VFLSHSFIGK
301: FFIKTLKMET AIHLVNGGKP HGILVKLSGE TGEILEILED SEGKTMKYVS EAYEREDGKL WIGSVYWPAV WVLDKSVYDL K

Best Arabidopsis Sequence Match ( AT3G57010.1 )
(BLAST)

001: MPISRRVLTP ITAAPVILAV LCFFFWSSII GPDNLKGTKH VLQDAKTIPL PVDGPESLEF DPQGEGPYVG VTDGRILKWR GEELGWVDFA YTSPHRDNCS
101: SHEVVPSCGR PLGLSFERKT GDLYICDGYF GVMKVGPEGG LAELVVDEAE GRKVMFANQG DIDEEEDIFY FNDSSDTYHF RDVFYVSLSG TKVGRVIRYD
201: MKKKEAKVIM DKLRLPNGLA LSKNGSFVVT CESSTNICHR IWVKGPKSGT NEVFATLPGS PDNIRRTPTG DFWVALHCKK NLFTRAVLIH TWVGRFFMNT
301: MKMETVIHFM NGGKPHGIVV KLSGETGEIL EILEDSEGKT VKYVSEAYET KDGKLWIGSV YWPAVWVLDT SVYDSI

Arabidopsis Description

SSL8Protein STRICTOSIDINE SYNTHASE-LIKE 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J7]
SUBAcon: [golgi,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.