Factsheet for Bra004614.1-P

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

cytosol 1
extracellular 4
endoplasmic reticulum 4
vacuole 7
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79943	Canola	vacuole	99.73	99.73
CDY23857	Canola	vacuole	99.46	99.46
Bra000223.1-P	Field mustard	vacuole	89.97	89.97
AT2G41300.1	Thale cress	vacuole	78.05	73.1
Bra014652.1-P	Field mustard	extracellular, golgi, vacuole	66.94	66.76
Bra014655.1-P	Field mustard	endoplasmic reticulum, golgi	67.48	65.35
Bra003263.1-P	Field mustard	vacuole	65.04	64.86
Bra034344.1-P	Field mustard	vacuole	64.77	64.59
Bra007293.1-P	Field mustard	vacuole	63.14	63.14
KRH66809	Soybean	endoplasmic reticulum	44.99	44.74
Bra007294.1-P	Field mustard	vacuole	44.99	44.38
KRG95135	Soybean	endoplasmic reticulum	44.44	44.2
Bra018623.1-P	Field mustard	cytosol	39.57	41.6
Bra002383.1-P	Field mustard	vacuole	41.46	38.73
Bra000222.1-P	Field mustard	cytosol	32.52	34.78
Bra007457.1-P	Field mustard	golgi, vacuole	38.21	34.14
Bra008125.1-P	Field mustard	cytosol, peroxisome, vacuole	21.68	34.04
Bra014536.1-P	Field mustard	vacuole	37.94	33.82
Bra008126.1-P	Field mustard	vacuole	29.81	33.64
Bra008127.1-P	Field mustard	vacuole	29.81	33.54
Bra004613.1-P	Field mustard	vacuole	33.88	33.33
Bra003820.1-P	Field mustard	vacuole	28.46	32.51
Bra015943.1-P	Field mustard	vacuole	28.18	31.9
Bra008124.1-P	Field mustard	vacuole	27.1	30.77
Bra038899.1-P	Field mustard	golgi, vacuole	22.22	22.1
Bra038898.1-P	Field mustard	golgi, vacuole	22.22	20.65
Bra036798.1-P	Field mustard	vacuole	21.41	19.08
Bra015944.1-P	Field mustard	vacuole	26.83	16.58

Protein Annotations

Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	EnsemblPlantsGene:Bra004614	EnsemblPlants:Bra004614.1	EnsemblPlants:Bra004614.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0016020	GO:GO:0016021	GO:GO:0016844	InterPro:IPR011042	UniProt:M4CK80	PFAM:PF03088
PANTHER:PTHR10426	PANTHER:PTHR10426:SF24	SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	TMHMM:TMhelix
UniParc:UPI000254768C	SEG:seg	:	:	:	:

Description

AT2G41300 (E=6e-172) | strictosidine synthase

Coordinates

chrA05:-:1062979..1065033

Molecular Weight (calculated)

41065.5 Da

IEP (calculated)

6.868

GRAVY (calculated)

-0.162

Length

369 amino acids

Sequence
(BLAST)

001: MPISRKFRTW AVVTAVIAVL VVFVGPYIIG PESIVGSKNV LTKATMIPLP VDGPESLDWD PQGEGPYVGV TDGSILKWRG ADLSWVKFAY STPDRGNCSR
101: HKVEPACGRP LGLSFEKKSG DLYFCDGYLG VMKVGPNGGL AEKVVDEVEG QKIMFANQMD IDEEDDAIYF NDSSDTYHFG DVFYAFLCGE KTGRAIRYDK
201: KTKEAKVIMD GLHFPNGLAI SKDGSFVLSC EVPTQLVHRY WVKGPKAGTR DIFAKLPGYA DNIRRTETGD FWVALHSKKT PFSRLSLMHP WIGKFFMKTL
301: NMDLLVFLFE GGKPHAGAVK LCGKTGEVME VLEDSEGKNM KFVSEVQERD GKLWFGSVFL PSVWVLDRQ

Best Arabidopsis Sequence Match ( AT2G41300.1 )
(BLAST)

001: MESLLLIAYA FLYLFLLSHE AEYKINADQS ENSNVGRFGG NYGRLGRLSG SIHHWTGEYR GLEKRPNHSE DNPPSRGWTG EPGLDPRGEG PYVGVTDGRI
101: LKWSGEDLGW IEFAYSSPHR KNCSSHKVEP ACGRPLGLSF EKKSGDLYFC DGYLGVMKVG PKGGLAEKVV DEVEGQKVMF ANQMDIDEEE DAIYFNDSSD
201: TYHFGDVFYA FLCGEKTGRA IRYDKKTKEA KVIMDRLHFP NGLALSIDGS FVLSCEVPTQ LVHRYWAKGP NAGTRDIFAK LPGYADNIRR TETGDFWVAL
301: HSKKTPFSRL SMIHPWVGKF FIKTLKMELL VFLFEGGKPH AVAVKLSGKT GEIMEILEDS EGKNMKFISE VQERDGRLWF GSVFLPSVWV LDRQ

Arabidopsis Description

SSL1Protein STRICTOSIDINE SYNTHASE-LIKE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4IJZ6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.