CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 8
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH09922
KRH23409

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57010.1	KRH09922	AT3G16310.1	21798944
AT3G57010.1	KRH23409	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66809	Soybean	endoplasmic reticulum	94.34	94.34
VIT_08s0007g05370.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	65.77	65.95
PGSC0003DMT400076777	Potato	vacuole	65.23	65.05
Solyc10g079610.1.1	Tomato	vacuole	64.96	64.78
PGSC0003DMT400044531	Potato	vacuole	61.19	60.86
Solyc04g040090.2.1	Tomato	vacuole	60.92	59.95
PGSC0003DMT400007661	Potato	vacuole	60.92	59.63
PGSC0003DMT400044684	Potato	vacuole	54.45	57.71
Solyc07g055740.1.1	Tomato	vacuole	53.91	56.98
PGSC0003DMT400044685	Potato	extracellular	38.81	53.53
Solyc07g055750.2.1	Tomato	golgi, plastid, vacuole	54.45	50.12
CDY70367	Canola	cytosol	35.85	48.54
CDY30962	Canola	vacuole	45.55	44.95
CDY22517	Canola	vacuole	44.47	44.72
CDY23857	Canola	vacuole	44.47	44.72
Bra000223.1-P	Field mustard	vacuole	44.47	44.72
Bra004614.1-P	Field mustard	vacuole	44.2	44.44
CDX79943	Canola	vacuole	44.2	44.44
CDX76030	Canola	endoplasmic reticulum, golgi, vacuole	45.01	44.41
CDX76033	Canola	vacuole	44.74	44.15
Bra014655.1-P	Field mustard	endoplasmic reticulum, golgi	45.01	43.83
CDY30963	Canola	vacuole	44.2	43.62
AT3G57010.1	Thale cress	extracellular, golgi, vacuole	43.94	43.35
KRH45407	Soybean	nucleus	40.43	42.98
KRH07462	Soybean	vacuole	40.16	42.94
CDX67673	Canola	vacuole	42.05	42.16
CDY54042	Canola	vacuole	41.78	41.89
AT3G57020.1	Thale cress	vacuole	41.78	41.89
Bra003263.1-P	Field mustard	vacuole	41.78	41.89
KRH26734	Soybean	vacuole	40.97	41.64
AT2G41300.1	Thale cress	vacuole	44.2	41.62
Bra034344.1-P	Field mustard	vacuole	41.51	41.62
CDX77108	Canola	vacuole	41.51	41.62
CDY30558	Canola	vacuole	41.78	41.55
CDY47397	Canola	vacuole	32.61	41.44
Bra014652.1-P	Field mustard	extracellular, golgi, vacuole	41.24	41.35
CDY30959	Canola	extracellular, golgi, vacuole	40.97	41.08
KRH23218	Soybean	golgi, vacuole	44.74	40.49
Bra007293.1-P	Field mustard	vacuole	40.16	40.38
CDX72080	Canola	endoplasmic reticulum, extracellular, golgi	40.16	40.38
CDY06144	Canola	vacuole	40.16	40.38
KRH66810	Soybean	vacuole	41.51	40.31
CDY39351	Canola	extracellular, plasma membrane, vacuole	37.74	40.11
KRH10120	Soybean	endoplasmic reticulum	44.2	40.0
KRH56180	Soybean	endoplasmic reticulum	46.63	39.23
KRH22599	Soybean	vacuole	40.43	38.96
KRH03206	Soybean	vacuole	32.88	36.31
KRH56734	Soybean	vacuole	33.42	36.26
KRH54773	Soybean	vacuole	32.88	36.2
KRH63133	Soybean	peroxisome, vacuole	14.82	31.79
KRH37504	Soybean	vacuole	26.15	27.09
KRH69688	Soybean	golgi, vacuole	25.34	25.61
KRH07935	Soybean	endoplasmic reticulum	25.88	25.4
KRH69689	Soybean	plastid	26.15	24.49
KRH37503	Soybean	vacuole	19.95	23.57

Protein Annotations

EntrezGene:100815025	Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	EMBL:ACUP02012083	EnsemblPlantsGene:GLYMA_19G132400
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016020	GO:GO:0016787
GO:GO:0016788	GO:GO:0016844	UniProt:I1N8U7	InterPro:IPR011042	EnsemblPlants:KRG95135	ProteinID:KRG95135
ProteinID:KRG95135.1	PFAM:PF03088	PANTHER:PTHR10426	PANTHER:PTHR10426:SF22	SUPFAM:SSF63829	SignalP:SignalP-noTM
InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	TMHMM:TMhelix	UniParc:UPI000233E75D	SEG:seg	:

Description

hypothetical protein

Coordinates

chr19:+:39327806..39331665

Molecular Weight (calculated)

40459.7 Da

IEP (calculated)

7.064

GRAVY (calculated)

-0.012

Length

371 amino acids

Sequence
(BLAST)

001: MNTGLVAGAA LLALLAITFS LLNPQTLFSP PHVPGSKDHL HAARLLHVTG AVGPESLVFD ADGGGPYTGV ADGRILKWEG EERGWTEFAV TSSNRSDCVR
101: PFAPELEHIC GRPLGLRFDK KNGDLYIADA YLGLKVVGSA GGLATEVVTE VEGQPLQFTN DMDISEDEEV IYFTDSTTIF QRRQFMLVLL SGDKTGRLMK
201: YNKSTKEVTV LLRGLAFPNG VALSKDGSFV LVAETTTCRI LQLWLRGPKA GHVDTFAVLP GFPDNVRRNS QGHFWVALHA KGSRFAKWVS SNPWAGKALL
301: KIGFNFKQLH SSFAGWKPHA AAVKLSDKGE ILEVLEDCDG KTLKFISEVE EKDGKLWIAS VLMPFIGIYG L

Best Arabidopsis Sequence Match ( AT3G57030.1 )
(BLAST)

001: MTMMIITVFL TVIAAVLAIL VKNSQTGSGI FAPPEISGSR DVFPSAKVVN LTGASGPESI AFDPAGEGPY VGVSDGRILK WRGEPLGWSD FAHTSSNRQE
101: CARPFAPELE HVCGRPLGLR FDKKTGDLYI ADAYFGLLVV GPAGGLAKPL VTEAEGQPFR FTNDLDIDEQ EDVIYFTDTS ARFQRRQFLA AVLNVDKTGR
201: FIKYDRSSKK ATVLLQGLAF ANGVALSKDR SFVLVVETTT CKILRLWLSG PNAGTHQVFA ELPGFPDNIR RNSNGEFWVA LHSKKGLFAK LSLTQTWFRD
301: LVLRLPISPQ RLHSLFTGGI PHATAIKLSE SGKVLEVLED KEGKTLRFIS EVEEKDGKLW IGSVLVPFLG VYDL

Arabidopsis Description

SSL10Protein STRICTOSIDINE SYNTHASE-LIKE 10 [Source:UniProtKB/Swiss-Prot;Acc:Q4V3D9]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.