CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
vacuole 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	vacuole
Plant-mPloc:	cytosol, vacuole
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH09922
KRH11076
KRH21197
KRH23409
KRH31520
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036
KRH76090

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51450.1	KRG97393	AT1G27300.1	21798944
AT3G51450.1	KRH31520	AT1G27300.1	21798944
AT3G51450.1	KRH76090	AT1G27300.1	21798944
AT3G51450.1	KRH09922	AT3G16310.1	21798944
AT3G51450.1	KRH23409	AT3G16310.1	21798944
AT3G51450.1	KRH11076	AT4G19030.1	21798944
AT3G51450.1	KRH21197	AT4G19030.1	21798944
AT3G51450.1	KRH42923	AT4G19030.1	21798944
AT3G51450.1	KRH42926	AT4G19030.1	21798944
AT3G51450.1	KRH45251	AT4G19030.1	21798944
AT3G51450.1	KRH59035	AT4G19030.1	21798944
AT3G51450.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69688	Soybean	golgi, vacuole	54.8	59.13
KRH07935	Soybean	endoplasmic reticulum	56.06	58.73
VIT_04s0210g00060.t01	Wine grape	cytosol, mitochondrion	37.88	55.76
VIT_04s0210g00100.t01	Wine grape	cytosol	22.47	50.86
VIT_04s0210g00120.t01	Wine grape	vacuole	47.47	49.6
Os10t0543500-01	Rice	plasma membrane	31.82	49.41
VIT_04s0210g00080.t01	Wine grape	vacuole	47.22	49.34
PGSC0003DMT400003995	Potato	golgi, vacuole	45.96	48.66
Solyc02g082900.2.1	Tomato	vacuole	45.2	48.25
VIT_04s0210g00090.t01	Wine grape	mitochondrion, vacuole	23.48	47.45
VIT_04s0210g00130.t01	Wine grape	plasma membrane, vacuole	33.08	45.8
TraesCS1A01G203800.1	Wheat	cytosol, plastid, vacuole	28.03	45.49
CDY33280	Canola	golgi, vacuole	42.17	45.14
VIT_04s0210g00050.t01	Wine grape	plastid	47.47	45.08
AT3G51440.1	Thale cress	golgi, vacuole	42.17	45.01
CDY16307	Canola	golgi, vacuole	41.67	44.59
AT3G51430.1	Thale cress	golgi, vacuole	41.67	44.47
AT3G51450.1	Thale cress	vacuole	41.67	44.47
CDX73720	Canola	golgi, vacuole	40.91	43.55
AT3G51420.1	Thale cress	golgi, vacuole	40.4	43.24
HORVU1Hr1G052450.8	Barley	extracellular, golgi, vacuole	40.15	43.21
Bra038899.1-P	Field mustard	golgi, vacuole	40.4	43.13
CDY33279	Canola	golgi, vacuole	40.4	43.13
CDY16306	Canola	golgi, vacuole	38.64	42.86
TraesCS1D01G207200.2	Wheat	extracellular, golgi, vacuole	39.65	42.78
GSMUA_AchrUn_...	Banana	plastid	26.77	42.4
TraesCS1B01G217600.1	Wheat	extracellular, golgi, vacuole	39.14	42.23
Bra038898.1-P	Field mustard	golgi, vacuole	40.66	40.55
OQU92210	Sorghum	golgi, plastid, vacuole	44.7	39.95
CDX78005	Canola	vacuole	40.15	38.41
Bra036798.1-P	Field mustard	vacuole	39.9	38.16
VIT_04s0210g00040.t01	Wine grape	cytosol, peroxisome, vacuole	29.8	31.47
KRH37504	Soybean	vacuole	23.99	26.54
KRH66809	Soybean	endoplasmic reticulum	24.49	26.15
KRG95135	Soybean	endoplasmic reticulum	24.49	26.15
KRH22599	Soybean	vacuole	23.99	24.68
KRH26734	Soybean	vacuole	22.73	24.66
KRH54773	Soybean	vacuole	20.96	24.63
KRH07462	Soybean	vacuole	21.46	24.5
KRH45407	Soybean	nucleus	21.46	24.36
VIT_04s0210g00030.t01	Wine grape	vacuole	46.21	23.67
KRH10120	Soybean	endoplasmic reticulum	24.49	23.66
KRH37503	Soybean	vacuole	18.69	23.57
KRH66810	Soybean	vacuole	22.47	23.3
KRH03206	Soybean	vacuole	19.7	23.21
KRH23218	Soybean	golgi, vacuole	23.99	23.17
KRH63133	Soybean	peroxisome, vacuole	10.1	23.12
KRH56734	Soybean	vacuole	19.44	22.51
KRH56180	Soybean	endoplasmic reticulum	25.0	22.45

Protein Annotations

EntrezGene:100806445	Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	EMBL:ACUP02000728	EnsemblPlantsGene:GLYMA_02G042400
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016788	GO:GO:0016844	InterPro:IPR011042	UniProt:K7K6E4	EnsemblPlants:KRH69689
ProteinID:KRH69689	ProteinID:KRH69689.1	ProteinID:KRH69690.1	ProteinID:KRH69691.1	PFAM:PF03088	PANTHER:PTHR10426
PANTHER:PTHR10426:SF58	SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	TMHMM:TMhelix	UniParc:UPI000295B617
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:3985790..3989395

Molecular Weight (calculated)

44653.6 Da

IEP (calculated)

8.098

GRAVY (calculated)

-0.224

Length

396 amino acids

Sequence
(BLAST)

001: MSQSSHVGSA SSSPYHSHFQ SPTKRRTKQR SCLLSSLFAI AFMVALVSVL YWLGSLGPAH EWSRPIGSEV VAVGEVSGPE DLAYDKRRRV IYTGCEDGWI
101: KRVTVTDSVA DTVVKNWVNT GGRPLGLALE KSGELMVADA FKGLLRVTRK KKVEVLADEV EGLKFNLTDG VDVAEDGTIY FTDATYKHSL DDYYNDIIEG
201: KPHGRFMNYN PETKKVTVLA RNLYFPNGVV VSHDQHFVIY CETIMKRCRK YYIEGPKKGR IGEFCRDLPG MPDNIHYVGQ GQYYIAMATS LTPEWDLLLR
301: YPFIQKVAAM VTKYVLQPKE NGGVLVVDLE GKPTAHYYDS ELSLISSGIK IGNYIYCGSL MYPFLVRFDM KQYPAPFPYM NDEIISATQN YLNRLT

Best Arabidopsis Sequence Match ( AT3G51440.1 )
(BLAST)

001: MPVFLSSRFL FFCIIVPLLI SITLYQLDTF DPAHHPADSL ISSTASIPPL INERFLTGAE FIGVGLLNSP EDIAYHEDSG FIYTGCVDGW VKRVKVAESV
101: NDSLVEDLVN TGGRPLGIAF GIHGEVIVAD AYKGLLNISG DGKKTELLTE EADGVRFKLP DAVTVADNGV LYFTDGSYKY NLHQFSFDIL EGKPHGRLMS
201: FDPTTKVTRV LLRDLYFANG VSLSPDQTHL VFCETPIRRC SKYYINGGRV ELFIQGLPGY PDNIRYDGDG HYWIAMPSGV TTLWKLSMKY PFLRKITAMA
301: AKYGYEPMFM ENAGVLQVDL DGNPIAYYHD QALSHITTGV KIGNYLYCGS LWHSHILRLD LLKYPAQNKK L

Arabidopsis Description

SSL6Protein STRICTOSIDINE SYNTHASE-LIKE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD05]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.