Subcellular Localization
min:
: max
Winner_takes_all: golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33280 | Canola | golgi, vacuole | 97.3 | 97.3 |
| Bra038898.1-P | Field mustard | golgi, vacuole | 94.32 | 87.91 |
| CDY33279 | Canola | golgi, vacuole | 81.35 | 81.13 |
| CDY16306 | Canola | golgi, vacuole | 77.57 | 80.39 |
| CDX73720 | Canola | golgi, vacuole | 80.54 | 80.11 |
| AT3G51440.1 | Thale cress | golgi, vacuole | 78.92 | 78.71 |
| AT3G51430.1 | Thale cress | golgi, vacuole | 77.3 | 77.09 |
| AT3G51450.1 | Thale cress | vacuole | 75.14 | 74.93 |
| AT3G51420.1 | Thale cress | golgi, vacuole | 74.32 | 74.32 |
| CDX78005 | Canola | vacuole | 77.3 | 69.08 |
| VIT_04s0210g00060.t01 | Wine grape | cytosol, mitochondrion | 39.73 | 54.65 |
| PGSC0003DMT400003995 | Potato | golgi, vacuole | 53.78 | 53.21 |
| Os10t0543500-01 | Rice | plasma membrane | 35.68 | 51.76 |
| Solyc02g082900.2.1 | Tomato | vacuole | 51.89 | 51.75 |
| VIT_04s0210g00120.t01 | Wine grape | vacuole | 51.62 | 50.4 |
| VIT_04s0210g00080.t01 | Wine grape | vacuole | 51.35 | 50.13 |
| TraesCS1A01G203800.1 | Wheat | cytosol, plastid, vacuole | 32.7 | 49.59 |
| VIT_04s0210g00100.t01 | Wine grape | cytosol | 23.24 | 49.14 |
| KRH69688 | Soybean | golgi, vacuole | 48.38 | 48.77 |
| VIT_04s0210g00090.t01 | Wine grape | mitochondrion, vacuole | 25.14 | 47.45 |
| VIT_04s0210g00130.t01 | Wine grape | plasma membrane, vacuole | 36.49 | 47.2 |
| VIT_04s0210g00050.t01 | Wine grape | plastid | 52.97 | 47.0 |
| KRH07935 | Soybean | endoplasmic reticulum | 47.84 | 46.83 |
| HORVU1Hr1G052450.8 | Barley | extracellular, golgi, vacuole | 45.95 | 46.2 |
| TraesCS1B01G217600.1 | Wheat | extracellular, golgi, vacuole | 45.68 | 46.05 |
| TraesCS1D01G207200.2 | Wheat | extracellular, golgi, vacuole | 45.14 | 45.5 |
| GSMUA_AchrUn_... | Banana | plastid | 29.19 | 43.2 |
| KRH69689 | Soybean | plastid | 44.59 | 41.67 |
| OQU92210 | Sorghum | golgi, plastid, vacuole | 48.38 | 40.41 |
| VIT_04s0210g00040.t01 | Wine grape | cytosol, peroxisome, vacuole | 36.22 | 35.73 |
| CDX92388 | Canola | vacuole | 26.49 | 26.78 |
| CDX95058 | Canola | vacuole | 27.03 | 26.74 |
| CDX93560 | Canola | vacuole | 27.57 | 25.95 |
| CDY16615 | Canola | endoplasmic reticulum, extracellular, vacuole | 27.03 | 25.32 |
| VIT_04s0210g00030.t01 | Wine grape | vacuole | 52.43 | 25.1 |
| CDX72079 | Canola | vacuole | 22.16 | 24.85 |
| CDY70367 | Canola | cytosol | 18.38 | 24.82 |
| CDY47728 | Canola | vacuole | 21.35 | 24.16 |
| CDY23858 | Canola | vacuole | 24.32 | 24.06 |
| CDY45863 | Canola | vacuole | 21.08 | 24.0 |
| CDX73037 | Canola | vacuole | 21.08 | 23.78 |
| CDY06143 | Canola | vacuole | 24.59 | 23.7 |
| CDY47729 | Canola | vacuole | 20.81 | 23.69 |
| CDX96506 | Canola | vacuole | 20.81 | 23.69 |
| CDY45861 | Canola | vacuole | 21.08 | 23.64 |
| CDX73039 | Canola | vacuole | 20.81 | 23.62 |
| CDX71901 | Canola | extracellular, golgi, vacuole | 25.68 | 23.57 |
| CDY22515 | Canola | vacuole | 22.16 | 23.5 |
| CDX96505 | Canola | vacuole | 20.81 | 23.48 |
| CDX79944 | Canola | vacuole | 23.78 | 23.47 |
| CDX73038 | Canola | vacuole | 20.54 | 23.38 |
| CDX89027 | Canola | endoplasmic reticulum, vacuole | 25.41 | 23.27 |
| CDY35420 | Canola | vacuole | 21.89 | 23.14 |
| CDX96507 | Canola | vacuole | 20.27 | 23.01 |
| CDY05993 | Canola | endoplasmic reticulum, golgi, vacuole | 24.86 | 22.83 |
| CDY23857 | Canola | vacuole | 22.7 | 22.76 |
| CDY22517 | Canola | vacuole | 22.7 | 22.76 |
| CDX79943 | Canola | vacuole | 22.7 | 22.76 |
| CDY66189 | Canola | vacuole | 18.11 | 22.56 |
| CDX68204 | Canola | vacuole | 19.46 | 21.95 |
| CDY66188 | Canola | vacuole | 19.19 | 21.65 |
| CDX72080 | Canola | endoplasmic reticulum, extracellular, golgi | 21.35 | 21.41 |
| CDX77108 | Canola | vacuole | 20.81 | 20.81 |
| CDY30959 | Canola | extracellular, golgi, vacuole | 20.81 | 20.81 |
| CDY30558 | Canola | vacuole | 20.81 | 20.64 |
| CDY06144 | Canola | vacuole | 20.54 | 20.6 |
| CDX67673 | Canola | vacuole | 20.54 | 20.54 |
| CDY54042 | Canola | vacuole | 20.27 | 20.27 |
| CDX76030 | Canola | endoplasmic reticulum, golgi, vacuole | 20.54 | 20.21 |
| CDY30962 | Canola | vacuole | 20.54 | 20.21 |
| CDY39351 | Canola | extracellular, plasma membrane, vacuole | 18.65 | 19.77 |
| CDY47397 | Canola | vacuole | 15.41 | 19.52 |
| CDX76033 | Canola | vacuole | 19.46 | 19.15 |
| CDY30963 | Canola | vacuole | 19.46 | 19.15 |
Protein Annotations
| Gene3D:2.120.10.30 | MapMan:50.4.3 | InterPro:6-blade_b-propeller_TolB-like | GO:A0A078FTZ7 | UniProt:A0A078FTZ7 | EnsemblPlants:CDY16307 |
| ProteinID:CDY16307 | ProteinID:CDY16307.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016844 | EnsemblPlantsGene:GSBRNA2T00090811001 |
| InterPro:IPR011042 | PFAM:PF03088 | PANTHER:PTHR10426 | PANTHER:PTHR10426:SF58 | SUPFAM:SSF63829 | InterPro:Strictosidine_synth_cons-reg |
| InterPro:Strictosidine_synthase | TMHMM:TMhelix | UniParc:UPI0004EB4516 | SEG:seg | : | : |
Description
BnaC01g23420DBnaC01g23420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTZ7]
Coordinates
chrLK032062:-:559391..561040
Molecular Weight (calculated)
41590.0 Da
IEP (calculated)
6.909
GRAVY (calculated)
-0.052
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLFFSLRLL FFSAIIALLA SIVLYRFDTF DPAPLPSDAL VYSTDSIPPL INNQFLTGAE FIGAGLLNSP EDIAYHRDSG LIYTGCVDGW VKRVKAFESA
101: NDSVVEDWVN TGGRPLGLAF GLHGEVIVAD AYKGLLNISD DGKKTELLTD EAEGVKFKLT DAVAVRDNGI LYFTDASYKY NLHHFAFDIW EGKPHGRLMS
201: FDPITRTTRV LLRDRYFSNG VSMSPDQTHL VFCETPLRRC SKYYINEERV EVFIQSLPGY PDNIRYDGDG HYWIAMPSGV TTLWKLSFRY PFIRKLQALA
301: AKYGFNTMIM ENAGALQVDL DGKPIALYHD PKHSHVTSGV KIGKYLYCGS LLGSHIVRLD LLKYPAQKRL
101: NDSVVEDWVN TGGRPLGLAF GLHGEVIVAD AYKGLLNISD DGKKTELLTD EAEGVKFKLT DAVAVRDNGI LYFTDASYKY NLHHFAFDIW EGKPHGRLMS
201: FDPITRTTRV LLRDRYFSNG VSMSPDQTHL VFCETPLRRC SKYYINEERV EVFIQSLPGY PDNIRYDGDG HYWIAMPSGV TTLWKLSFRY PFIRKLQALA
301: AKYGFNTMIM ENAGALQVDL DGKPIALYHD PKHSHVTSGV KIGKYLYCGS LLGSHIVRLD LLKYPAQKRL
001: MPMFYSSRFL FFFTIVPLLV SIALYQLDTF DPAPVPSEAY ASSTTSIPPL ISDKYLTGAE FIGVGLLDKP EDIAYHQDSN LIYTGCIDGW VKRVSVHDSA
101: NDSVVEDWVN TGGRPLGIAF GVHGEVIVAD AYKGLLNISG DGKKTELLTD QAEGVKFKLT DVVAVADNGV LYFTDASYKY TLHQVKFDIL EGKPHGRLMS
201: FDPTTRVTRV LLKDLYFANG VSMSPDQTHL IFCETPMRRC SKYYINEERV EVFIQGLPGY PDNIRYDGDG HYWIAMVSGA STLWRLSMKY PFLRKITAIA
301: AKYGVELMFM KNAGVLQVDL DGNPIAYYHD QRLSHITTGI KIGNYLYCGN ILHSYIIRLD LLKYPAQKKK L
101: NDSVVEDWVN TGGRPLGIAF GVHGEVIVAD AYKGLLNISG DGKKTELLTD QAEGVKFKLT DVVAVADNGV LYFTDASYKY TLHQVKFDIL EGKPHGRLMS
201: FDPTTRVTRV LLKDLYFANG VSMSPDQTHL IFCETPMRRC SKYYINEERV EVFIQGLPGY PDNIRYDGDG HYWIAMVSGA STLWRLSMKY PFLRKITAIA
301: AKYGVELMFM KNAGVLQVDL DGNPIAYYHD QRLSHITTGI KIGNYLYCGN ILHSYIIRLD LLKYPAQKKK L
Arabidopsis Description
SSL5Protein STRICTOSIDINE SYNTHASE-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAZ7]
SUBAcon: [golgi,vacuole]
SUBAcon: [golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.