CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93560	Canola	vacuole	97.33	92.62
Bra018623.1-P	Field mustard	cytosol	86.63	92.31
AT1G08470.1	Thale cress	endoplasmic reticulum, vacuole	87.43	83.85
VIT_06s0009g00850.t01	Wine grape	cytosol	64.44	68.66
PGSC0003DMT400015199	Potato	vacuole	69.25	66.24
PGSC0003DMT400007732	Potato	vacuole	68.98	65.98
Solyc11g071800.1.1	Tomato	plastid, vacuole	68.72	65.73
CDX92388	Canola	vacuole	61.76	63.11
Solyc06g073910.2.1	Tomato	cytosol, plasma membrane, vacuole	50.8	62.5
GSMUA_Achr3P30810_001	Banana	endoplasmic reticulum, vacuole	64.44	61.95
CDY16615	Canola	endoplasmic reticulum, extracellular, vacuole	64.17	60.76
KRH26734	Soybean	vacuole	58.82	60.27
GSMUA_Achr8P04740_001	Banana	endoplasmic reticulum, golgi, vacuole	64.97	58.55
HORVU5Hr1G114720.1	Barley	plastid	28.88	56.84
EER90869	Sorghum	vacuole	60.43	56.78
KRH22599	Soybean	vacuole	57.75	56.1
TraesCS5D01G400000.1	Wheat	golgi	59.09	55.53
KRH56180	Soybean	endoplasmic reticulum	65.24	55.33
TraesCS5A01G390200.1	Wheat	golgi	58.82	55.28
TraesCS5B01G395100.1	Wheat	vacuole	58.82	55.14
HORVU5Hr1G095260.1	Barley	extracellular	58.29	54.64
Os03t0750700-01	Rice	plasma membrane	58.02	54.39
HORVU5Hr1G114800.1	Barley	extracellular	29.68	51.63
CDX72079	Canola	vacuole	42.25	47.88
CDY70367	Canola	cytosol	32.62	44.53
CDY06143	Canola	vacuole	44.65	43.49
Zm00001d034032_P001	Maize	plasma membrane	60.7	42.12
CDY22517	Canola	vacuole	39.84	40.38
CDX89027	Canola	endoplasmic reticulum, vacuole	43.58	40.35
CDY05993	Canola	endoplasmic reticulum, golgi, vacuole	43.05	39.95
CDX76030	Canola	endoplasmic reticulum, golgi, vacuole	40.11	39.89
CDX71901	Canola	extracellular, golgi, vacuole	42.78	39.7
CDY23857	Canola	vacuole	39.04	39.57
CDY22515	Canola	vacuole	36.9	39.54
CDX67673	Canola	vacuole	39.04	39.46
CDY54042	Canola	vacuole	39.04	39.46
CDY30962	Canola	vacuole	39.57	39.36
CDX76033	Canola	vacuole	39.57	39.36
CDY30963	Canola	vacuole	39.57	39.36
CDX72080	Canola	endoplasmic reticulum, extracellular, golgi	38.77	39.3
CDX79943	Canola	vacuole	38.77	39.3
HORVU6Hr1G025030.1	Barley	cytosol	11.5	38.74
CDY35420	Canola	vacuole	36.1	38.57
CDY30959	Canola	extracellular, golgi, vacuole	37.97	38.38
CDY06144	Canola	vacuole	37.7	38.21
CDX77108	Canola	vacuole	37.7	38.11
CDY30558	Canola	vacuole	37.7	37.8
CDY47397	Canola	vacuole	29.41	37.67
CDY39351	Canola	extracellular, plasma membrane, vacuole	34.76	37.25
CDY23858	Canola	vacuole	36.36	36.36
CDX79944	Canola	vacuole	36.36	36.27
CDX96506	Canola	vacuole	31.02	35.69
CDY47728	Canola	vacuole	30.75	35.17
CDX73038	Canola	vacuole	30.48	35.08
CDY45861	Canola	vacuole	30.75	34.85
CDX96505	Canola	vacuole	30.48	34.76
CDX73037	Canola	vacuole	30.48	34.76
CDX73039	Canola	vacuole	30.21	34.66
CDX96507	Canola	vacuole	29.95	34.36
CDY47729	Canola	vacuole	29.68	34.15
CDY45863	Canola	vacuole	29.14	33.54
CDY66189	Canola	vacuole	25.67	32.32
CDX68204	Canola	vacuole	28.34	32.32
CDY66188	Canola	vacuole	28.07	32.01
CDY16307	Canola	golgi, vacuole	26.74	27.03
CDY33280	Canola	golgi, vacuole	26.47	26.76
CDY33279	Canola	golgi, vacuole	26.2	26.42
CDY16306	Canola	golgi, vacuole	25.13	26.33
CDX73720	Canola	golgi, vacuole	25.94	26.08
CDX78005	Canola	vacuole	24.87	22.46

Protein Annotations

EnsemblPlants:CDX95058	EnsemblPlantsGene:GSBRNA2T00100578001	Gene3D:2.120.10.30	GO:A0A078E6U0	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016844	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042
InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	PANTHER:PTHR10426	PANTHER:PTHR10426:SF24	PFAM:PF03088	ProteinID:CDX95058
ProteinID:CDX95058.1	SignalP:SignalP-noTM	SUPFAM:SSF63829	UniParc:UPI0004EE8A81	MapMan:50.4.3	:

Description

BnaC05g06130D

Coordinates

chrLK031886:+:910761..913630

Molecular Weight (calculated)

42016.2 Da

IEP (calculated)

7.373

GRAVY (calculated)

-0.273

Length

374 amino acids

Sequence
(BLAST)

001: MATTVFSKLS KIFFLFAIYC ALDPFKHSSI SKYPVFQTYK IDMPPLSSLP KERDHENLLQ NSEIKFLNEV QGPESIAFDP LGRGPYTGVA DGRILFWDGT
101: RWTDFAYTSN NRSELCDTKS SLLAYLKNEH ICGRPLGLRF HKRTGDLYVA DAYFGIMKVG PEGGLATSLT TEGDGVPLRF TNDLDVDDEG NVYFTDSSSV
201: FQRRNFMHLI VSGEDTGRVL KYNPETKETT TLLRNLQFPN GLSLGKDGSF FIFCEGSIGR LRKYWLKGEK AGTSEVVALL HGFPDNIRTN KDGDFWVAVH
301: CHRNIFTHVM AHHPNVGGWP HAVAVKYSKD GKVLKVLEDK QGKVVKAVSE IEEKDGKLWM GSVLMSFIAV YDLP

Best Arabidopsis Sequence Match ( AT1G08470.1 )
(BLAST)

001: MAMSILAKIF LVFAIYCAID PFSHSSISKF PDFKTYKIDM PPLSSLPKER DRQNLLQNSE IRFLNEVQGP ESIAFDPQGR GPYTGVADGR ILFWNGTRWT
101: DFAYTSNNRS ELCDPKPSLL DYLKDEDICG RPLGLRFDKK NGDLYIADAY LGIMKVGPEG GLATSVTNEA DGVPLRFTND LDIDDEGNVY FTDSSSFFQR
201: RKFMLLIVSG EDSGRVLKYN PKTKETTTLV RNLQFPNGLS LGKDGSFFIF CEGSIGRLRK YWLKGEKAGT SEVVALLHGF PDNIRTNKDG DFWVAVHCHR
301: NIFTHLMAHY PRVRKFFLKL PISVKFQYLL QVGGWPHAVA VKYSEEGKVL KVLEDSKGKV VKAVSEVEEK DGKLWMGSVL MSFIAVYDLP

Arabidopsis Description

SSL3SSL3 [Source:UniProtKB/TrEMBL;Acc:A0A178WK70]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.