Factsheet for Solyc11g071800.1.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, plastid

Predictor Summary:

extracellular 5
golgi 5
plasma membrane 5
endoplasmic reticulum 5
vacuole 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007732	Potato	vacuole	96.93	96.93
VIT_06s0009g00850.t01	Wine grape	cytosol	70.08	78.06
Solyc06g073910.2.1	Tomato	cytosol, plasma membrane, vacuole	60.1	77.3
Bra018623.1-P	Field mustard	cytosol	63.17	70.37
AT1G08470.1	Thale cress	endoplasmic reticulum, vacuole	69.82	70.0
CDX95058	Canola	vacuole	65.73	68.72
CDX93560	Canola	vacuole	67.77	67.43
HORVU5Hr1G114720.1	Barley	plastid	32.23	66.32
GSMUA_Achr3P30810_001	Banana	endoplasmic reticulum, vacuole	65.73	66.07
KRH26734	Soybean	vacuole	61.38	65.75
EER90869	Sorghum	vacuole	63.94	62.81
KRH56180	Soybean	endoplasmic reticulum	70.59	62.59
KRH22599	Soybean	vacuole	61.13	62.08
GSMUA_Achr8P04740_001	Banana	endoplasmic reticulum, golgi, vacuole	65.22	61.45
TraesCS5D01G400000.1	Wheat	golgi	61.38	60.3
Os03t0750700-01	Rice	plasma membrane	61.13	59.9
HORVU5Hr1G095260.1	Barley	extracellular	61.13	59.9
TraesCS5A01G390200.1	Wheat	golgi	60.87	59.8
TraesCS5B01G395100.1	Wheat	vacuole	60.87	59.65
HORVU5Hr1G114800.1	Barley	extracellular	29.41	53.49
Zm00001d034032_P001	Maize	plasma membrane	64.71	46.94
Solyc10g079610.1.1	Tomato	vacuole	43.48	45.7
Solyc04g040090.2.1	Tomato	vacuole	43.99	45.62
Solyc07g055740.1.1	Tomato	vacuole	38.87	43.3
Solyc07g055750.2.1	Tomato	golgi, plastid, vacuole	42.46	41.19
Solyc03g053130.2.1	Tomato	extracellular	42.46	40.1
Solyc03g114530.2.1	Tomato	vacuole	30.69	36.14
Solyc03g114560.2.1	Tomato	extracellular	29.92	35.78
Solyc03g114550.1.1	Tomato	vacuole	24.55	35.04
HORVU6Hr1G025030.1	Barley	cytosol	9.72	34.23
Solyc12g039070.1.1	Tomato	nucleus	28.39	33.33
Solyc03g114540.1.1	Tomato	vacuole	28.64	33.33
Solyc05g025810.2.1	Tomato	plasma membrane, vacuole	26.09	28.81
Solyc02g082900.2.1	Tomato	vacuole	25.83	27.22

Protein Annotations

Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005783
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016020	GO:GO:0016787	GO:GO:0016788
GO:GO:0016844	InterPro:IPR011042	UniProt:K4DAN7	PFAM:PF03088	PANTHER:PTHR10426	PANTHER:PTHR10426:SF24
SUPFAM:SSF63829	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc11g071800.1	EnsemblPlants:Solyc11g071800.1.1	InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase
UniParc:UPI0002769983	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:55157357..55161373

Molecular Weight (calculated)

44137.9 Da

IEP (calculated)

7.844

GRAVY (calculated)

-0.246

Length

391 amino acids

Sequence
(BLAST)

001: MRAVSVFGGV FLVLAVYCGL DPFKHSAISE FPNFESFKVE MPAWSEIPVE KDSQNLLQKS EVKFLDQIQG PESIVFDPQG RGPYTGIADG RVVFWDGEKW
101: NDFAYTSANR SGLCDPKPSA LSYRKYEHIC GRPLGLRFDK RTGDLYIADA YLGLMKVGPE GGLAESLTTE AEGVPIGFAN DLDVDDEGNV YFTDSSTKYQ
201: RRNFIQLVFS AEDSGKVLKY NPRTKETTIL IRNLQFPNGL SLSKDGSFFI FCEGSKGRLR KYWLKGEKAG TSEVIAILPG YPDNVRANER NEFWVAIHCR
301: RTIYSYINGI YPRLRQFLLK LPISAKLQYL IHIGGRFTAV VVKYSPEGKL LQILEDRQGK VVRAVSEVEE RDGKLWMGSV LMSFISVYQL E

Best Arabidopsis Sequence Match ( AT1G08470.1 )
(BLAST)

001: MAMSILAKIF LVFAIYCAID PFSHSSISKF PDFKTYKIDM PPLSSLPKER DRQNLLQNSE IRFLNEVQGP ESIAFDPQGR GPYTGVADGR ILFWNGTRWT
101: DFAYTSNNRS ELCDPKPSLL DYLKDEDICG RPLGLRFDKK NGDLYIADAY LGIMKVGPEG GLATSVTNEA DGVPLRFTND LDIDDEGNVY FTDSSSFFQR
201: RKFMLLIVSG EDSGRVLKYN PKTKETTTLV RNLQFPNGLS LGKDGSFFIF CEGSIGRLRK YWLKGEKAGT SEVVALLHGF PDNIRTNKDG DFWVAVHCHR
301: NIFTHLMAHY PRVRKFFLKL PISVKFQYLL QVGGWPHAVA VKYSEEGKVL KVLEDSKGKV VKAVSEVEEK DGKLWMGSVL MSFIAVYDLP

Arabidopsis Description

SSL3SSL3 [Source:UniProtKB/TrEMBL;Acc:A0A178WK70]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.