Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- vacuole 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400015199 | Potato | vacuole | 91.12 | 70.84 |
| HORVU5Hr1G114720.1 | Barley | plastid | 41.45 | 66.32 |
| VIT_06s0009g00850.t01 | Wine grape | cytosol | 72.04 | 62.39 |
| Solyc11g071800.1.1 | Tomato | plastid, vacuole | 77.3 | 60.1 |
| Bra018623.1-P | Field mustard | cytosol | 64.8 | 56.13 |
| AT1G08470.1 | Thale cress | endoplasmic reticulum, vacuole | 67.43 | 52.56 |
| EER90869 | Sorghum | vacuole | 68.75 | 52.51 |
| CDX93560 | Canola | vacuole | 66.12 | 51.15 |
| CDX95058 | Canola | vacuole | 62.5 | 50.8 |
| GSMUA_Achr3P30810_001 | Banana | endoplasmic reticulum, vacuole | 64.47 | 50.39 |
| Os03t0750700-01 | Rice | plasma membrane | 65.13 | 49.62 |
| TraesCS5D01G400000.1 | Wheat | golgi | 64.8 | 49.5 |
| HORVU5Hr1G095260.1 | Barley | extracellular | 64.8 | 49.37 |
| TraesCS5A01G390200.1 | Wheat | golgi | 64.47 | 49.25 |
| TraesCS5B01G395100.1 | Wheat | vacuole | 63.82 | 48.62 |
| KRH26734 | Soybean | vacuole | 58.22 | 48.49 |
| KRH56180 | Soybean | endoplasmic reticulum | 69.74 | 48.07 |
| KRH22599 | Soybean | vacuole | 59.87 | 47.27 |
| GSMUA_Achr8P04740_001 | Banana | endoplasmic reticulum, golgi, vacuole | 62.83 | 46.02 |
| Zm00001d034032_P001 | Maize | plasma membrane | 68.42 | 38.59 |
| Solyc10g079610.1.1 | Tomato | vacuole | 47.04 | 38.44 |
| Solyc04g040090.2.1 | Tomato | vacuole | 46.05 | 37.14 |
| Solyc07g055740.1.1 | Tomato | vacuole | 42.43 | 36.75 |
| HORVU5Hr1G114800.1 | Barley | extracellular | 24.67 | 34.88 |
| Solyc07g055750.2.1 | Tomato | golgi, plastid, vacuole | 46.05 | 34.74 |
| Solyc03g053130.2.1 | Tomato | extracellular | 43.09 | 31.64 |
| Solyc03g114560.2.1 | Tomato | extracellular | 31.91 | 29.66 |
| Solyc03g114550.1.1 | Tomato | vacuole | 25.33 | 28.1 |
| Solyc03g114530.2.1 | Tomato | vacuole | 30.59 | 28.01 |
| Solyc12g039070.1.1 | Tomato | nucleus | 29.93 | 27.33 |
| Solyc03g114540.1.1 | Tomato | vacuole | 29.93 | 27.08 |
| Solyc05g025810.2.1 | Tomato | plasma membrane, vacuole | 27.96 | 24.01 |
| Solyc02g082900.2.1 | Tomato | vacuole | 28.62 | 23.45 |
| HORVU6Hr1G025030.1 | Barley | cytosol | 0.99 | 2.7 |
Protein Annotations
| Gene3D:2.120.10.30 | MapMan:50.4.3 | InterPro:6-blade_b-propeller_TolB-like | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005783 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0016788 |
| GO:GO:0016844 | InterPro:IPR011042 | UniProt:K4C9A9 | PFAM:PF03088 | PANTHER:PTHR10426 | PANTHER:PTHR10426:SF24 |
| SUPFAM:SSF63829 | EnsemblPlantsGene:Solyc06g073910.2 | EnsemblPlants:Solyc06g073910.2.1 | InterPro:Strictosidine_synth_cons-reg | InterPro:Strictosidine_synthase | UniParc:UPI0002766191 |
Description
No Description!
Coordinates
chr6:+:45627356..45630060
Molecular Weight (calculated)
34164.5 Da
IEP (calculated)
6.904
GRAVY (calculated)
-0.131
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MAELCCGMER NGLISHIRLL IGESGLCDPK PSPLSYLENE HICGRPLGLR FDKKTGDLYI ADAYFGLMKV GPEGGLAETL TTEAEGVPLV FTNDLDVDDE
101: GNVYFTDSST KYQRRNYMLL VYSAEDSGRV LKYNSNTKQT TVLVRNLQFP NGLSLSKDGS FFVFCEVAKG RLQKYWLKGE KAGTFEVMAV LPGYPDNVST
201: NERGEFWVAI HCRRTIYSYI NSIYPQLRLF LLKLPIPVKL RALLHLGGKL PAIVVKYNPE GKLLRILEDE EGKVVRAVSD VEEKDGKLWM GSVLMPFIAV
301: YQLQ
101: GNVYFTDSST KYQRRNYMLL VYSAEDSGRV LKYNSNTKQT TVLVRNLQFP NGLSLSKDGS FFVFCEVAKG RLQKYWLKGE KAGTFEVMAV LPGYPDNVST
201: NERGEFWVAI HCRRTIYSYI NSIYPQLRLF LLKLPIPVKL RALLHLGGKL PAIVVKYNPE GKLLRILEDE EGKVVRAVSD VEEKDGKLWM GSVLMPFIAV
301: YQLQ
001: MAMSILAKIF LVFAIYCAID PFSHSSISKF PDFKTYKIDM PPLSSLPKER DRQNLLQNSE IRFLNEVQGP ESIAFDPQGR GPYTGVADGR ILFWNGTRWT
101: DFAYTSNNRS ELCDPKPSLL DYLKDEDICG RPLGLRFDKK NGDLYIADAY LGIMKVGPEG GLATSVTNEA DGVPLRFTND LDIDDEGNVY FTDSSSFFQR
201: RKFMLLIVSG EDSGRVLKYN PKTKETTTLV RNLQFPNGLS LGKDGSFFIF CEGSIGRLRK YWLKGEKAGT SEVVALLHGF PDNIRTNKDG DFWVAVHCHR
301: NIFTHLMAHY PRVRKFFLKL PISVKFQYLL QVGGWPHAVA VKYSEEGKVL KVLEDSKGKV VKAVSEVEEK DGKLWMGSVL MSFIAVYDLP
101: DFAYTSNNRS ELCDPKPSLL DYLKDEDICG RPLGLRFDKK NGDLYIADAY LGIMKVGPEG GLATSVTNEA DGVPLRFTND LDIDDEGNVY FTDSSSFFQR
201: RKFMLLIVSG EDSGRVLKYN PKTKETTTLV RNLQFPNGLS LGKDGSFFIF CEGSIGRLRK YWLKGEKAGT SEVVALLHGF PDNIRTNKDG DFWVAVHCHR
301: NIFTHLMAHY PRVRKFFLKL PISVKFQYLL QVGGWPHAVA VKYSEEGKVL KVLEDSKGKV VKAVSEVEEK DGKLWMGSVL MSFIAVYDLP
Arabidopsis Description
SSL3SSL3 [Source:UniProtKB/TrEMBL;Acc:A0A178WK70]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.