Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018623.1-P | Field mustard | cytosol | 81.28 | 90.31 |
| CDX93560 | Canola | vacuole | 88.46 | 87.79 |
| CDX95058 | Canola | vacuole | 83.85 | 87.43 |
| VIT_06s0009g00850.t01 | Wine grape | cytosol | 65.38 | 72.65 |
| PGSC0003DMT400015199 | Potato | vacuole | 70.26 | 70.08 |
| Solyc11g071800.1.1 | Tomato | plastid, vacuole | 70.0 | 69.82 |
| PGSC0003DMT400007732 | Potato | vacuole | 69.74 | 69.57 |
| Solyc06g073910.2.1 | Tomato | cytosol, plasma membrane, vacuole | 52.56 | 67.43 |
| HORVU5Hr1G114720.1 | Barley | plastid | 31.79 | 65.26 |
| GSMUA_Achr3P30810_001 | Banana | endoplasmic reticulum, vacuole | 64.36 | 64.52 |
| KRH26734 | Soybean | vacuole | 60.0 | 64.11 |
| AT5G22020.2 | Thale cress | vacuole | 64.36 | 63.54 |
| EER90869 | Sorghum | vacuole | 62.82 | 61.56 |
| TraesCS5D01G400000.1 | Wheat | golgi | 60.77 | 59.55 |
| TraesCS5A01G390200.1 | Wheat | golgi | 60.51 | 59.3 |
| KRH22599 | Soybean | vacuole | 58.46 | 59.22 |
| GSMUA_Achr8P04740_001 | Banana | endoplasmic reticulum, golgi, vacuole | 62.82 | 59.04 |
| HORVU5Hr1G095260.1 | Barley | extracellular | 60.0 | 58.65 |
| KRH56180 | Soybean | endoplasmic reticulum | 66.15 | 58.5 |
| TraesCS5B01G395100.1 | Wheat | vacuole | 59.74 | 58.4 |
| Os03t0750700-01 | Rice | plasma membrane | 59.23 | 57.89 |
| HORVU5Hr1G114800.1 | Barley | extracellular | 28.46 | 51.63 |
| AT3G57030.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 46.41 | 48.4 |
| Zm00001d034032_P001 | Maize | plasma membrane | 62.31 | 45.08 |
| AT3G57020.1 | Thale cress | vacuole | 41.79 | 44.05 |
| AT3G57010.1 | Thale cress | extracellular, golgi, vacuole | 41.79 | 43.35 |
| AT3G59530.3 | Thale cress | golgi, vacuole | 41.28 | 39.95 |
| HORVU6Hr1G025030.1 | Barley | cytosol | 11.28 | 39.64 |
| AT2G41290.1 | Thale cress | vacuole | 36.67 | 38.03 |
| AT2G41300.1 | Thale cress | vacuole | 38.21 | 37.82 |
| AT1G74010.1 | Thale cress | vacuole | 30.0 | 36.0 |
| AT1G74000.1 | Thale cress | vacuole | 29.23 | 34.65 |
| AT1G74020.1 | Thale cress | vacuole | 28.21 | 32.84 |
| AT3G51420.1 | Thale cress | golgi, vacuole | 24.62 | 25.95 |
| AT3G51440.1 | Thale cress | golgi, vacuole | 24.62 | 25.88 |
| AT3G51430.1 | Thale cress | golgi, vacuole | 24.36 | 25.61 |
| AT3G51450.1 | Thale cress | vacuole | 24.1 | 25.34 |
Protein Annotations
| Gene3D:2.120.10.30 | MapMan:50.4.3 | InterPro:6-blade_b-propeller_TolB-like | EntrezGene:837368 | UniProt:A0A178WK70 | ProteinID:AAF22901.1 |
| ProteinID:AEE28296.1 | EMBL:AF419594 | ArrayExpress:AT1G08470 | EnsemblPlantsGene:AT1G08470 | RefSeq:AT1G08470 | TAIR:AT1G08470 |
| RefSeq:AT1G08470-TAIR-G | EnsemblPlants:AT1G08470.1 | TAIR:AT1G08470.1 | EMBL:AY064047 | EMBL:AY117314 | Unigene:At.16363 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005783 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0016020 | GO:GO:0016787 | GO:GO:0016788 | GO:GO:0016844 | InterPro:IPR011042 | RefSeq:NP_563818.1 |
| ProteinID:OAP18720.1 | PFAM:PF03088 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR10426 | PANTHER:PTHR10426:SF24 |
| UniProt:Q8VWF6 | SUPFAM:SSF63829 | Symbol:SSL3 | SignalP:SignalP-noTM | InterPro:Strictosidine_synth_cons-reg | InterPro:Strictosidine_synthase |
| UniParc:UPI00000A897F | SEG:seg | : | : | : | : |
Description
SSL3SSL3 [Source:UniProtKB/TrEMBL;Acc:A0A178WK70]
Coordinates
chr1:-:2682058..2684171
Molecular Weight (calculated)
44038.9 Da
IEP (calculated)
8.183
GRAVY (calculated)
-0.239
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMSILAKIF LVFAIYCAID PFSHSSISKF PDFKTYKIDM PPLSSLPKER DRQNLLQNSE IRFLNEVQGP ESIAFDPQGR GPYTGVADGR ILFWNGTRWT
101: DFAYTSNNRS ELCDPKPSLL DYLKDEDICG RPLGLRFDKK NGDLYIADAY LGIMKVGPEG GLATSVTNEA DGVPLRFTND LDIDDEGNVY FTDSSSFFQR
201: RKFMLLIVSG EDSGRVLKYN PKTKETTTLV RNLQFPNGLS LGKDGSFFIF CEGSIGRLRK YWLKGEKAGT SEVVALLHGF PDNIRTNKDG DFWVAVHCHR
301: NIFTHLMAHY PRVRKFFLKL PISVKFQYLL QVGGWPHAVA VKYSEEGKVL KVLEDSKGKV VKAVSEVEEK DGKLWMGSVL MSFIAVYDLP
101: DFAYTSNNRS ELCDPKPSLL DYLKDEDICG RPLGLRFDKK NGDLYIADAY LGIMKVGPEG GLATSVTNEA DGVPLRFTND LDIDDEGNVY FTDSSSFFQR
201: RKFMLLIVSG EDSGRVLKYN PKTKETTTLV RNLQFPNGLS LGKDGSFFIF CEGSIGRLRK YWLKGEKAGT SEVVALLHGF PDNIRTNKDG DFWVAVHCHR
301: NIFTHLMAHY PRVRKFFLKL PISVKFQYLL QVGGWPHAVA VKYSEEGKVL KVLEDSKGKV VKAVSEVEEK DGKLWMGSVL MSFIAVYDLP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.