Factsheet for PGSC0003DMT400015199

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 8
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g073910.2.1	Tomato	cytosol, plasma membrane, vacuole	70.84	91.12
PGSC0003DMT400007732	Potato	vacuole	82.35	82.35
VIT_06s0009g00850.t01	Wine grape	cytosol	70.33	78.35
Bra018623.1-P	Field mustard	cytosol	63.68	70.94
AT1G08470.1	Thale cress	endoplasmic reticulum, vacuole	70.08	70.26
CDX95058	Canola	vacuole	66.24	69.25
CDX93560	Canola	vacuole	68.29	67.94
HORVU5Hr1G114720.1	Barley	plastid	32.74	67.37
GSMUA_Achr3P30810_001	Banana	endoplasmic reticulum, vacuole	65.22	65.55
KRH26734	Soybean	vacuole	61.13	65.48
EER90869	Sorghum	vacuole	64.45	63.32
KRH56180	Soybean	endoplasmic reticulum	70.84	62.81
GSMUA_Achr8P04740_001	Banana	endoplasmic reticulum, golgi, vacuole	65.73	61.93
KRH22599	Soybean	vacuole	60.87	61.82
TraesCS5D01G400000.1	Wheat	golgi	62.4	61.31
HORVU5Hr1G095260.1	Barley	extracellular	62.4	61.15
TraesCS5A01G390200.1	Wheat	golgi	62.15	61.06
Os03t0750700-01	Rice	plasma membrane	62.15	60.9
TraesCS5B01G395100.1	Wheat	vacuole	61.64	60.4
HORVU5Hr1G114800.1	Barley	extracellular	30.69	55.81
PGSC0003DMT400044531	Potato	vacuole	45.01	47.19
PGSC0003DMT400076777	Potato	vacuole	44.76	47.04
Zm00001d034032_P001	Maize	plasma membrane	64.71	46.94
PGSC0003DMT400044684	Potato	vacuole	40.41	45.14
PGSC0003DMT400044685	Potato	extracellular	30.69	44.61
PGSC0003DMT400007661	Potato	vacuole	43.22	44.59
PGSC0003DMT400063282	Potato	extracellular, vacuole	16.88	42.58
PGSC0003DMT400030927	Potato	golgi, plasma membrane, vacuole	43.48	41.77
PGSC0003DMT400063277	Potato	vacuole	32.48	38.25
PGSC0003DMT400056839	Potato	vacuole	30.43	38.14
PGSC0003DMT400048627	Potato	cytosol, golgi, mitochondrion, vacuole	32.23	36.95
HORVU6Hr1G025030.1	Barley	cytosol	9.97	35.14
PGSC0003DMT400063274	Potato	vacuole	30.18	35.12
PGSC0003DMT400063286	Potato	vacuole	29.67	34.73
PGSC0003DMT400001736	Potato	cytosol, peroxisome, vacuole	24.55	34.66
PGSC0003DMT400005990	Potato	cytosol	23.53	31.83
PGSC0003DMT400003995	Potato	golgi, vacuole	27.62	28.88

Protein Annotations

EntrezGene:102582023	Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016844	InterPro:IPR011042	UniProt:M1A5M4
PFAM:PF03088	EnsemblPlantsGene:PGSC0003DMG400005937	PGSC:PGSC0003DMG400005937	EnsemblPlants:PGSC0003DMT400015199	PANTHER:PTHR10426	PANTHER:PTHR10426:SF24
SUPFAM:SSF63829	SignalP:SignalP-noTM	InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	UniParc:UPI0002950743	RefSeq:XP_006361111.1

Description

Strictosidine synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400005937]

Coordinates

chr6:+:54482842..54486200

Molecular Weight (calculated)

44061.9 Da

IEP (calculated)

6.536

GRAVY (calculated)

-0.271

Length

391 amino acids

Sequence
(BLAST)

001: MRPAGVFAGV FLLFALYCGF DPFKHSAISE IKDFKAYRVD PPAWSEIPVE KDTQNLLQKS EIKFLNQIQG PESIAFDPKG RGPYTGIADG RIVWWDGEKW
101: TDFAYTSANR SGLCDPKPSP LSYLENEHIC GRPLGLRFDK RTGDLYIADA YFGLMKVGPE GGLAETLTTE AEGVPLRFTN DLDIDDEGNV YFTDSSTKYQ
201: RRNYMLLVYS AEDSGRVLKY NPNTKQTTAL VRNLQFPNGL SLSKDGSFFV FCEGAKGRLQ KYWLKGEKAG TLEVMAVLPG YPDNVSTNER GEFWVAIHCR
301: RTIYSYINSI YPQLRLFLLK LPIPVKLRAL LHLGGKQPAI VVKYSPEGKL LQILEDEEGK VVRAVSEVEE KDGKLWMGSV LMPFIAVYQL E

Best Arabidopsis Sequence Match ( AT1G08470.1 )
(BLAST)

001: MAMSILAKIF LVFAIYCAID PFSHSSISKF PDFKTYKIDM PPLSSLPKER DRQNLLQNSE IRFLNEVQGP ESIAFDPQGR GPYTGVADGR ILFWNGTRWT
101: DFAYTSNNRS ELCDPKPSLL DYLKDEDICG RPLGLRFDKK NGDLYIADAY LGIMKVGPEG GLATSVTNEA DGVPLRFTND LDIDDEGNVY FTDSSSFFQR
201: RKFMLLIVSG EDSGRVLKYN PKTKETTTLV RNLQFPNGLS LGKDGSFFIF CEGSIGRLRK YWLKGEKAGT SEVVALLHGF PDNIRTNKDG DFWVAVHCHR
301: NIFTHLMAHY PRVRKFFLKL PISVKFQYLL QVGGWPHAVA VKYSEEGKVL KVLEDSKGKV VKAVSEVEEK DGKLWMGSVL MSFIAVYDLP

Arabidopsis Description

SSL3SSL3 [Source:UniProtKB/TrEMBL;Acc:A0A178WK70]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.