Factsheet for TraesCS5D01G400000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G114720.1	Barley	plastid	47.49	99.47
TraesCS5A01G390200.1	Wheat	golgi	99.0	99.0
TraesCS5B01G395100.1	Wheat	vacuole	97.24	96.99
HORVU5Hr1G095260.1	Barley	extracellular	96.98	96.74
HORVU5Hr1G114800.1	Barley	extracellular	49.75	92.09
Os03t0750700-01	Rice	plasma membrane	86.43	86.22
EER90869	Sorghum	vacuole	85.68	85.68
GSMUA_Achr3P30810_001	Banana	endoplasmic reticulum, vacuole	68.59	70.18
VIT_06s0009g00850.t01	Wine grape	cytosol	60.3	68.38
Solyc06g073910.2.1	Tomato	cytosol, plasma membrane, vacuole	49.5	64.8
HORVU6Hr1G025030.1	Barley	cytosol	17.84	63.96
Bra018623.1-P	Field mustard	cytosol	56.28	63.82
Zm00001d034032_P001	Maize	plasma membrane	85.93	63.45
PGSC0003DMT400015199	Potato	vacuole	61.31	62.4
PGSC0003DMT400007732	Potato	vacuole	60.8	61.89
CDX92388	Canola	vacuole	56.53	61.48
Solyc11g071800.1.1	Tomato	plastid, vacuole	60.3	61.38
Bra002383.1-P	Field mustard	vacuole	60.55	61.01
AT1G08470.1	Thale cress	endoplasmic reticulum, vacuole	59.55	60.77
AT5G22020.2	Thale cress	vacuole	60.3	60.76
CDY16615	Canola	endoplasmic reticulum, extracellular, vacuole	60.3	60.76
CDX93560	Canola	vacuole	59.05	59.8
CDX95058	Canola	vacuole	55.53	59.09
KRH26734	Soybean	vacuole	52.76	57.53
KRH56180	Soybean	endoplasmic reticulum	61.31	55.33
KRH22599	Soybean	vacuole	52.26	54.03
TraesCS2D01G076200.1	Wheat	vacuole	37.19	43.15
TraesCS2D01G076400.1	Wheat	vacuole	36.43	42.27
TraesCS2D01G076300.1	Wheat	vacuole	36.68	42.2
TraesCS2D01G076000.1	Wheat	golgi, vacuole	36.18	41.98
TraesCS5D01G202700.1	Wheat	vacuole	35.93	41.33
TraesCS3D01G256900.1	Wheat	mitochondrion, plastid	35.68	39.78
TraesCS5D01G389100.1	Wheat	plastid, vacuole	35.43	39.72
TraesCS7D01G140000.1	Wheat	golgi, vacuole	34.67	39.66
TraesCS7D01G139900.1	Wheat	vacuole	34.67	39.66
TraesCS7D01G076600.1	Wheat	cytosol	20.6	39.23
TraesCS5D01G202800.1	Wheat	golgi, vacuole	35.68	39.01
TraesCS4D01G215800.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	40.45	38.98
TraesCS7D01G140500.1	Wheat	golgi, vacuole	33.67	38.84
TraesCS3D01G303900.1	Wheat	cytosol	31.16	38.75
TraesCS3D01G503900.1	Wheat	nucleus	30.15	38.59
TraesCS7D01G075900.1	Wheat	vacuole	33.42	38.55
TraesCS3D01G504000.1	Wheat	vacuole	33.42	38.55
TraesCS7D01G076000.1	Wheat	vacuole	32.41	37.83
TraesCS7D01G076300.1	Wheat	vacuole	34.17	37.67
TraesCS7D01G140600.1	Wheat	endoplasmic reticulum, plasma membrane	28.89	37.46
TraesCS7D01G076500.1	Wheat	cytosol	17.84	37.37
TraesCS5D01G139700.1	Wheat	vacuole	34.17	36.46
TraesCS1D01G207200.2	Wheat	extracellular, golgi, vacuole	28.64	31.06
TraesCS2D01G177700.1	Wheat	plasma membrane, vacuole	27.14	29.43
TraesCS2D01G177900.2	Wheat	golgi	26.38	28.77

Protein Annotations

EnsemblPlants:TraesCS5D01G400000.1	EnsemblPlantsGene:TraesCS5D01G400000	Gene3D:2.120.10.30	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016844	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	InterPro:Strictosidine_synth_cons-reg
InterPro:Strictosidine_synthase	PANTHER:PTHR10426	PANTHER:PTHR10426:SF24	PFAM:PF03088	SEG:seg	SignalP:SignalP-noTM
SUPFAM:SSF63829	TMHMM:TMhelix	MapMan:50.4.3	:	:	:

Description

No Description!

Coordinates

chr5D:-:465200685..465203014

Molecular Weight (calculated)

43645.0 Da

IEP (calculated)

6.253

GRAVY (calculated)

-0.117

Length

398 amino acids

Sequence
(BLAST)

001: MASAGVVAAA AVVAALAAFC ATDPLRLGSM ADFPGFEALP VELPDAAEIP PHADAAERLR GAEIRFRGEV QGPESVAFDP LGRGPYTGVA DGRVLVWDGA
101: RWAYFAHASP GWTAERCGGP KASPMEYLKD EHVCGRALGI RFDKRNGDLY IADAYFGLSK VGPEGGLATP LATEAEGVRF NFTNDLDLDA DGNVYFTDSS
201: VLYQRRHFMQ LVFSGDASGR LLKYNPETKE TTVLHRNLQF PNGVSLSKDG SFFVFCEGSR GRLSRYWLKG EKAGTVDLFA ILPGFPDNVR TNDKGEFWVA
301: IHCRRSAYAR LLSHRVQLRK FLLSLPIPAK YHYLMQIGGN LHALIIKYSP EGEVLDILED TKGQVVRAVS EVEEKDGKLW IGSVLMPFIA VFDYAKES

Best Arabidopsis Sequence Match ( AT1G08470.1 )
(BLAST)

001: MAMSILAKIF LVFAIYCAID PFSHSSISKF PDFKTYKIDM PPLSSLPKER DRQNLLQNSE IRFLNEVQGP ESIAFDPQGR GPYTGVADGR ILFWNGTRWT
101: DFAYTSNNRS ELCDPKPSLL DYLKDEDICG RPLGLRFDKK NGDLYIADAY LGIMKVGPEG GLATSVTNEA DGVPLRFTND LDIDDEGNVY FTDSSSFFQR
201: RKFMLLIVSG EDSGRVLKYN PKTKETTTLV RNLQFPNGLS LGKDGSFFIF CEGSIGRLRK YWLKGEKAGT SEVVALLHGF PDNIRTNKDG DFWVAVHCHR
301: NIFTHLMAHY PRVRKFFLKL PISVKFQYLL QVGGWPHAVA VKYSEEGKVL KVLEDSKGKV VKAVSEVEEK DGKLWMGSVL MSFIAVYDLP

Arabidopsis Description

SSL3SSL3 [Source:UniProtKB/TrEMBL;Acc:A0A178WK70]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.