Factsheet for TraesCS2D01G177900.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 6
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	vacuole

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G170300.1	Wheat	cytosol	84.11	95.94
TraesCS2B01G196600.1	Wheat	golgi	92.6	92.6
TraesCS2D01G177700.1	Wheat	plasma membrane, vacuole	81.1	80.65
Zm00001d006853_P001	Maize	vacuole	74.79	74.39
KXG36678	Sorghum	vacuole	72.05	71.47
KXG36676	Sorghum	vacuole	70.41	71.39
Os07t0614000-02	Rice	vacuole	71.51	71.12
GSMUA_Achr11P...	Banana	golgi, vacuole	57.81	58.77
PGSC0003DMT400005990	Potato	cytosol	41.37	52.25
KRH37504	Soybean	vacuole	49.04	50.0
Solyc05g025810.2.1	Tomato	plasma membrane, vacuole	47.95	49.44
VIT_11s0016g00860.t01	Wine grape	golgi, vacuole	48.77	48.77
VIT_11s0016g00880.t01	Wine grape	plastid	49.04	48.64
KRH37503	Soybean	vacuole	36.71	42.68
VIT_11s0016g00870.t01	Wine grape	plasma membrane, vacuole	49.04	38.83
TraesCS1D01G207200.2	Wheat	extracellular, golgi, vacuole	34.52	34.33
TraesCS7D01G076500.1	Wheat	cytosol	15.62	30.0
TraesCS7D01G076600.1	Wheat	cytosol	16.99	29.67
TraesCS7D01G140500.1	Wheat	golgi, vacuole	27.12	28.7
TraesCS3D01G303900.1	Wheat	cytosol	24.93	28.44
TraesCS7D01G139900.1	Wheat	vacuole	26.85	28.16
TraesCS2D01G076200.1	Wheat	vacuole	26.3	27.99
TraesCS7D01G140000.1	Wheat	golgi, vacuole	26.58	27.87
TraesCS2D01G076000.1	Wheat	golgi, vacuole	26.03	27.7
TraesCS2D01G076400.1	Wheat	vacuole	25.75	27.41
TraesCS5D01G389100.1	Wheat	plastid, vacuole	26.3	27.04
TraesCS3D01G256900.1	Wheat	mitochondrion, plastid	26.03	26.61
TraesCS5D01G202700.1	Wheat	vacuole	25.21	26.59
TraesCS5D01G400000.1	Wheat	golgi	28.77	26.38
TraesCS7D01G075900.1	Wheat	vacuole	24.93	26.38
TraesCS5D01G202800.1	Wheat	golgi, vacuole	26.3	26.37
TraesCS3D01G504000.1	Wheat	vacuole	24.66	26.09
TraesCS3D01G503900.1	Wheat	nucleus	22.19	26.05
TraesCS2D01G076300.1	Wheat	vacuole	24.66	26.01
TraesCS7D01G076000.1	Wheat	vacuole	24.11	25.81
TraesCS7D01G076300.1	Wheat	vacuole	25.48	25.76
TraesCS5D01G139700.1	Wheat	vacuole	25.21	24.66
TraesCS7D01G140600.1	Wheat	endoplasmic reticulum, plasma membrane	20.55	24.43
TraesCS4D01G215800.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	26.85	23.73

Protein Annotations

EnsemblPlants:TraesCS2D01G177900.2	EnsemblPlantsGene:TraesCS2D01G177900	Gene3D:2.120.10.30	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016844	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	InterPro:Strictosidine_synth_cons-reg
InterPro:Strictosidine_synthase	PANTHER:PTHR10426	PANTHER:PTHR10426:SF35	PFAM:PF03088	SEG:seg	SignalP:SignalP-noTM
SUPFAM:SSF63829	MapMan:50.4.3	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:121354394..121356107

Molecular Weight (calculated)

38976.7 Da

IEP (calculated)

6.230

GRAVY (calculated)

0.076

Length

365 amino acids

Sequence
(BLAST)

001: MAPGGLLGTA AVAVLLSLAV HVALHCPIQP LPSPPPPARH PPNNLLQGLE KLGEGRLSGP EDVYVDAAAG GTLYTATRDG WLQRMQPNGS WEHWRFVGGT
101: DLLGIAPSAD GSMLVCDAHK GLLKVEDGHV TILASTVEGS TIRFADAVIE ASDGTVYFSD GSTRFGFGEW FLDYLEARPT GRLLRYDPGT GKASVALDNL
201: AFANGVALSR DEAFVIVCET AGFRCTRLWL KGDKAGQKQT FVDNLPGSPD NIHLAPDGSF WIALLQLRSP WMDLITRWTL AKRVVASIPA LHEPIKATAK
301: GAMVAQVSED GEIIRVLDDS QGKVIHFITS VTEFDGHLFL GSLSTNFVGK LSLAKVPHVH AAVSS

Best Arabidopsis Sequence Match ( AT3G51420.1 )
(BLAST)

001: MVLFFSTRFL FFSIFFPCLI SITLYQLDSF EPASLPADSL ITSPTSIPPL LNDRFLTGAE FIGVGLLNNP EDIAYHKDSN LIYTGCVDGW VKRVSVHDSA
101: NDSIVEDWVN TGGRPLGIAF GLHGEVIVAD ANKGLLSISD GGKKTELLTD EADGVRFKLT DAVTVADNGV LYFTDASSKY DFYQFIFDFL EGKPHGRVMS
201: FDPTTRATRV LLKDLYFANG ISMSPDQTHF VFCETIMRRC SKYYISEERV EVFIQGLPGY PDNIRYDGDG HYWIALISEV TTSWKLSMKY LFLRKLIYMA
301: AKYGVELLSI KNAAVLQVDL DGNPIAMYHD HPFSHITSGV KIGNHLYFGS LLHSYITRLD LLKYPAQKKL

Arabidopsis Description

SSL4SSL4 [Source:UniProtKB/TrEMBL;Acc:A0A178VDG6]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.