Factsheet for TraesCS2B01G196600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G170300.1	Wheat	cytosol	83.01	94.69
TraesCS2D01G177900.2	Wheat	golgi	92.6	92.6
TraesCS2B01G196500.1	Wheat	golgi, vacuole	80.0	79.56
Zm00001d006853_P001	Maize	vacuole	72.6	72.21
KXG36678	Sorghum	vacuole	70.68	70.11
KXG36676	Sorghum	vacuole	69.04	70.0
Os07t0614000-02	Rice	vacuole	69.86	69.48
GSMUA_Achr11P...	Banana	golgi, vacuole	57.26	58.22
PGSC0003DMT400005990	Potato	cytosol	42.74	53.98
Solyc05g025810.2.1	Tomato	plasma membrane, vacuole	48.77	50.28
VIT_11s0016g00880.t01	Wine grape	plastid	49.86	49.46
VIT_11s0016g00860.t01	Wine grape	golgi, vacuole	49.32	49.32
KRH37504	Soybean	vacuole	48.22	49.16
KRH37503	Soybean	vacuole	36.44	42.36
VIT_11s0016g00870.t01	Wine grape	plasma membrane, vacuole	50.14	39.7
TraesCS1B01G217600.1	Wheat	extracellular, golgi, vacuole	33.42	33.24
TraesCS3B01G558800.1	Wheat	cytosol	16.16	28.23
TraesCS3B01G289800.1	Wheat	vacuole	25.75	27.98
TraesCS3B01G559000.1	Wheat	cytosol	14.25	27.81
TraesCS5B01G382800.1	Wheat	vacuole	25.75	27.57
TraesCS5B01G383000.1	Wheat	vacuole	25.21	27.14
TraesCS7B01G040900.1	Wheat	golgi, vacuole	25.75	27.01
TraesCS2B01G092900.1	Wheat	golgi, vacuole	25.21	26.9
TraesCS2B01G093000.1	Wheat	golgi, vacuole	25.21	26.82
TraesCS3B01G338500.1	Wheat	extracellular, golgi, vacuole	25.21	26.82
TraesCS5B01G395100.1	Wheat	vacuole	29.32	26.82
TraesCS7B01G040400.1	Wheat	golgi, vacuole	24.93	26.15
TraesCS5B01G330900.1	Wheat	extracellular, vacuole	13.15	25.95
TraesCS2B01G281700.1	Wheat	golgi, vacuole	24.38	25.87
TraesCS5B01G195400.1	Wheat	vacuole	25.21	25.27
TraesCS5B01G195300.1	Wheat	endoplasmic reticulum, extracellular, vacuole	23.84	25.14
TraesCS3B01G559100.1	Wheat	vacuole	23.56	24.93
TraesCS5B01G133600.1	Wheat	extracellular, vacuole	25.21	24.6
TraesCS4B01G215300.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	26.3	23.24

Protein Annotations

EnsemblPlants:TraesCS2B01G196600.1	EnsemblPlantsGene:TraesCS2B01G196600	Gene3D:2.120.10.30	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016844	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	InterPro:Strictosidine_synth_cons-reg
InterPro:Strictosidine_synthase	PANTHER:PTHR10426	PANTHER:PTHR10426:SF35	PFAM:PF03088	SEG:seg	SignalP:SignalP-noTM
SUPFAM:SSF63829	MapMan:50.4.3	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:174662658..174664205

Molecular Weight (calculated)

38997.6 Da

IEP (calculated)

5.396

GRAVY (calculated)

0.085

Length

365 amino acids

Sequence
(BLAST)

001: MAPGGFFGTA AVAVVLSLAV HVAFHCPIQP LPSPPSPARL PPNNLLQGLE KLGEGRLSGP EDVYIDAAAG GTLYTATRDG WLQRMQPNGS WEQWRFVGGT
101: DLLGIAPSAD GSMLVCDAHK GLLKAEEGRV TILASTVEGS TIRFADAVIE ASDGAVYFSD GSARFGFGEW FLDYLEARPT GRLLKYDPGT GKASVALDNL
201: AFANGVALSR DEAFLVVCES WGFRCSKLWL KGDKAGQKET FVDNLPGSPD SIHLAPDGSF WIALLQLRSP WMDLITRWTL TKRVVASIPA LHEPIKATAK
301: GAMVAQVSED GEIIRVLDDS QGKVIHFITS VSEFDGHLFL GSLSTNFLGK LSLAKVPQVQ AAVSS

Best Arabidopsis Sequence Match ( AT3G51420.1 )
(BLAST)

001: MVLFFSTRFL FFSIFFPCLI SITLYQLDSF EPASLPADSL ITSPTSIPPL LNDRFLTGAE FIGVGLLNNP EDIAYHKDSN LIYTGCVDGW VKRVSVHDSA
101: NDSIVEDWVN TGGRPLGIAF GLHGEVIVAD ANKGLLSISD GGKKTELLTD EADGVRFKLT DAVTVADNGV LYFTDASSKY DFYQFIFDFL EGKPHGRVMS
201: FDPTTRATRV LLKDLYFANG ISMSPDQTHF VFCETIMRRC SKYYISEERV EVFIQGLPGY PDNIRYDGDG HYWIALISEV TTSWKLSMKY LFLRKLIYMA
301: AKYGVELLSI KNAAVLQVDL DGNPIAMYHD HPFSHITSGV KIGNHLYFGS LLHSYITRLD LLKYPAQKKL

Arabidopsis Description

SSL4SSL4 [Source:UniProtKB/TrEMBL;Acc:A0A178VDG6]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.