Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G207200.2 | Wheat | extracellular, golgi, vacuole | 96.46 | 96.46 |
| TraesCS1A01G203800.1 | Wheat | cytosol, plastid, vacuole | 63.76 | 95.9 |
| HORVU1Hr1G052450.8 | Barley | extracellular, golgi, vacuole | 93.46 | 93.21 |
| Os10t0543500-01 | Rice | plasma membrane | 52.59 | 75.69 |
| OQU92210 | Sorghum | golgi, plastid, vacuole | 75.75 | 62.75 |
| VIT_04s0210g00060.t01 | Wine grape | cytosol, mitochondrion | 41.42 | 56.51 |
| GSMUA_AchrUn_... | Banana | plastid | 36.78 | 54.0 |
| VIT_04s0210g00120.t01 | Wine grape | vacuole | 51.23 | 49.6 |
| VIT_04s0210g00080.t01 | Wine grape | vacuole | 50.95 | 49.34 |
| VIT_04s0210g00130.t01 | Wine grape | plasma membrane, vacuole | 37.6 | 48.25 |
| VIT_04s0210g00100.t01 | Wine grape | cytosol | 22.62 | 47.43 |
| VIT_04s0210g00090.t01 | Wine grape | mitochondrion, vacuole | 25.07 | 46.94 |
| CDX73720 | Canola | golgi, vacuole | 47.41 | 46.77 |
| AT3G51430.1 | Thale cress | golgi, vacuole | 47.14 | 46.63 |
| AT3G51450.1 | Thale cress | vacuole | 47.14 | 46.63 |
| AT3G51440.1 | Thale cress | golgi, vacuole | 46.59 | 46.09 |
| Bra038899.1-P | Field mustard | golgi, vacuole | 46.32 | 45.82 |
| AT3G51420.1 | Thale cress | golgi, vacuole | 46.05 | 45.68 |
| CDY16307 | Canola | golgi, vacuole | 46.05 | 45.68 |
| CDY33279 | Canola | golgi, vacuole | 46.05 | 45.55 |
| CDY33280 | Canola | golgi, vacuole | 45.78 | 45.41 |
| CDY16306 | Canola | golgi, vacuole | 44.14 | 45.38 |
| PGSC0003DMT400003995 | Potato | golgi, vacuole | 45.78 | 44.92 |
| KRH07935 | Soybean | endoplasmic reticulum | 46.05 | 44.71 |
| KRH69688 | Soybean | golgi, vacuole | 44.41 | 44.41 |
| Solyc02g082900.2.1 | Tomato | vacuole | 44.41 | 43.94 |
| VIT_04s0210g00050.t01 | Wine grape | plastid | 49.59 | 43.65 |
| Bra038898.1-P | Field mustard | golgi, vacuole | 44.41 | 41.06 |
| Bra036798.1-P | Field mustard | vacuole | 44.96 | 39.86 |
| CDX78005 | Canola | vacuole | 44.69 | 39.61 |
| KRH69689 | Soybean | plastid | 42.23 | 39.14 |
| TraesCS2B01G196500.1 | Wheat | golgi, vacuole | 34.06 | 34.06 |
| VIT_04s0210g00040.t01 | Wine grape | cytosol, peroxisome, vacuole | 34.33 | 33.6 |
| TraesCS2B01G196600.1 | Wheat | golgi | 33.24 | 33.42 |
| TraesCS3B01G559000.1 | Wheat | cytosol | 16.08 | 31.55 |
| TraesCS3B01G558800.1 | Wheat | cytosol | 17.44 | 30.62 |
| TraesCS3B01G338500.1 | Wheat | extracellular, golgi, vacuole | 28.34 | 30.32 |
| TraesCS3B01G289800.1 | Wheat | vacuole | 27.25 | 29.76 |
| TraesCS5B01G395100.1 | Wheat | vacuole | 31.34 | 28.82 |
| TraesCS2B01G092900.1 | Wheat | golgi, vacuole | 26.7 | 28.66 |
| TraesCS5B01G330900.1 | Wheat | extracellular, vacuole | 14.44 | 28.65 |
| TraesCS3B01G559100.1 | Wheat | vacuole | 26.7 | 28.41 |
| TraesCS5B01G195300.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 26.43 | 28.03 |
| TraesCS5B01G383000.1 | Wheat | vacuole | 25.89 | 28.02 |
| TraesCS2B01G093000.1 | Wheat | golgi, vacuole | 26.16 | 27.99 |
| TraesCS2B01G281700.1 | Wheat | golgi, vacuole | 26.16 | 27.91 |
| TraesCS7B01G040400.1 | Wheat | golgi, vacuole | 26.43 | 27.87 |
| TraesCS7B01G040900.1 | Wheat | golgi, vacuole | 26.43 | 27.87 |
| TraesCS5B01G382800.1 | Wheat | vacuole | 25.89 | 27.86 |
| TraesCS5B01G195400.1 | Wheat | vacuole | 26.7 | 26.92 |
| TraesCS4B01G215300.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion, vacuole | 26.7 | 23.73 |
| TraesCS5B01G133600.1 | Wheat | extracellular, vacuole | 23.71 | 23.26 |
| VIT_04s0210g00030.t01 | Wine grape | vacuole | 48.5 | 23.03 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G217600.1 | EnsemblPlantsGene:TraesCS1B01G217600 | Gene3D:2.120.10.30 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016844 | InterPro:6-blade_b-propeller_TolB-like | InterPro:IPR011042 | InterPro:Strictosidine_synth_cons-reg |
| InterPro:Strictosidine_synthase | PANTHER:PTHR10426 | PANTHER:PTHR10426:SF58 | PFAM:PF03088 | SEG:seg | SignalP:SignalP-noTM |
| SUPFAM:SSF63829 | TMHMM:TMhelix | MapMan:50.4.3 | : | : | : |
Description
No Description!
Coordinates
chr1B:+:394852560..394854420
Molecular Weight (calculated)
39312.0 Da
IEP (calculated)
4.959
GRAVY (calculated)
0.093
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MATGLGVAAK AVLLVLAPVV ISVALYSPKD FSPAELPPEH SFGADVSAPR HDARVLAASE RIGEGLLPGP EDLAYDAAGG WLYTGCADGW VRRVSVPGGD
101: VEGWAYTGGR PLGVVLAGDG GIVVADADKG LLKVRQDKTV ELLTDAAEGL KFALTDGVDI AADGTIYFTD ASYKYSLAHH FLDVLEARPH GRLMSFDPST
201: HRTSVLARDL YFANGVAVAP DQDSLIFCET VMRRCSRYHI RGDKAGTVES FIDSLPGLPD NIRYDGEGRY WIALSAGRTL QLDVLMWSPL LRKLVYMVEK
301: YVMAVPQGLR DAGTMSVALN GEPVTMYTDP GLALATGWLK VGGYLYYGSL ASSYISRVDL TKSSIEA
101: VEGWAYTGGR PLGVVLAGDG GIVVADADKG LLKVRQDKTV ELLTDAAEGL KFALTDGVDI AADGTIYFTD ASYKYSLAHH FLDVLEARPH GRLMSFDPST
201: HRTSVLARDL YFANGVAVAP DQDSLIFCET VMRRCSRYHI RGDKAGTVES FIDSLPGLPD NIRYDGEGRY WIALSAGRTL QLDVLMWSPL LRKLVYMVEK
301: YVMAVPQGLR DAGTMSVALN GEPVTMYTDP GLALATGWLK VGGYLYYGSL ASSYISRVDL TKSSIEA
001: MVLFFSTRFL FFSIFFPCLI SITLYQLDSF EPASLPADSL ITSPTSIPPL LNDRFLTGAE FIGVGLLNNP EDIAYHKDSN LIYTGCVDGW VKRVSVHDSA
101: NDSIVEDWVN TGGRPLGIAF GLHGEVIVAD ANKGLLSISD GGKKTELLTD EADGVRFKLT DAVTVADNGV LYFTDASSKY DFYQFIFDFL EGKPHGRVMS
201: FDPTTRATRV LLKDLYFANG ISMSPDQTHF VFCETIMRRC SKYYISEERV EVFIQGLPGY PDNIRYDGDG HYWIALISEV TTSWKLSMKY LFLRKLIYMA
301: AKYGVELLSI KNAAVLQVDL DGNPIAMYHD HPFSHITSGV KIGNHLYFGS LLHSYITRLD LLKYPAQKKL
101: NDSIVEDWVN TGGRPLGIAF GLHGEVIVAD ANKGLLSISD GGKKTELLTD EADGVRFKLT DAVTVADNGV LYFTDASSKY DFYQFIFDFL EGKPHGRVMS
201: FDPTTRATRV LLKDLYFANG ISMSPDQTHF VFCETIMRRC SKYYISEERV EVFIQGLPGY PDNIRYDGDG HYWIALISEV TTSWKLSMKY LFLRKLIYMA
301: AKYGVELLSI KNAAVLQVDL DGNPIAMYHD HPFSHITSGV KIGNHLYFGS LLHSYITRLD LLKYPAQKKL
Arabidopsis Description
SSL4SSL4 [Source:UniProtKB/TrEMBL;Acc:A0A178VDG6]
SUBAcon: [golgi,vacuole]
SUBAcon: [golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.