CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78905
CDX84933
CDX97739
CDX98596
CDX99411
CDY01565
CDY03907
CDY15722
CDY27605
CDY30157

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51450.1	CDX84933	AT1G27300.1	21798944
AT3G51450.1	CDY03907	AT1G27300.1	21798944
AT3G51450.1	CDY15722	AT1G27300.1	21798944
AT3G51450.1	CDY27605	AT1G27300.1	21798944
AT3G51450.1	CDX97739	AT3G16310.1	21798944
AT3G51450.1	CDY30157	AT3G16310.1	21798944
AT3G51450.1	CDX78905	AT4G19030.1	21798944
AT3G51450.1	CDX98596	AT4G19030.1	21798944
AT3G51450.1	CDX99411	AT4G19030.1	21798944
AT3G51450.1	CDY01565	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78005	Canola	vacuole	90.86	81.64
CDY33279	Canola	golgi, vacuole	80.65	80.86
CDY16307	Canola	golgi, vacuole	80.11	80.54
CDY33280	Canola	golgi, vacuole	79.57	80.0
CDY16306	Canola	golgi, vacuole	76.08	79.27
AT3G51430.1	Thale cress	golgi, vacuole	77.96	78.17
AT3G51440.1	Thale cress	golgi, vacuole	77.42	77.63
AT3G51450.1	Thale cress	vacuole	76.08	76.28
AT3G51420.1	Thale cress	golgi, vacuole	73.39	73.78
VIT_04s0210g00060.t01	Wine grape	cytosol, mitochondrion	40.32	55.76
PGSC0003DMT400003995	Potato	golgi, vacuole	53.76	53.48
VIT_04s0210g00100.t01	Wine grape	cytosol	24.73	52.57
Solyc02g082900.2.1	Tomato	vacuole	52.15	52.29
Os10t0543500-01	Rice	plasma membrane	35.75	52.16
VIT_04s0210g00120.t01	Wine grape	vacuole	52.42	51.45
VIT_04s0210g00080.t01	Wine grape	vacuole	52.15	51.19
TraesCS1A01G203800.1	Wheat	cytosol, plastid, vacuole	33.06	50.41
VIT_04s0210g00050.t01	Wine grape	plastid	54.84	48.92
VIT_04s0210g00130.t01	Wine grape	plasma membrane, vacuole	37.1	48.25
KRH69688	Soybean	golgi, vacuole	47.58	48.23
HORVU1Hr1G052450.8	Barley	extracellular, golgi, vacuole	47.04	47.55
TraesCS1B01G217600.1	Wheat	extracellular, golgi, vacuole	46.77	47.41
VIT_04s0210g00090.t01	Wine grape	mitochondrion, vacuole	24.73	46.94
TraesCS1D01G207200.2	Wheat	extracellular, golgi, vacuole	46.24	46.87
KRH07935	Soybean	endoplasmic reticulum	46.77	46.03
GSMUA_AchrUn_...	Banana	plastid	29.84	44.4
KRH69689	Soybean	plastid	43.55	40.91
OQU92210	Sorghum	golgi, plastid, vacuole	46.77	39.28
VIT_04s0210g00040.t01	Wine grape	cytosol, peroxisome, vacuole	35.22	34.93
CDX95058	Canola	vacuole	26.08	25.94
CDX92388	Canola	vacuole	25.27	25.68
CDX93560	Canola	vacuole	26.88	25.45
VIT_04s0210g00030.t01	Wine grape	vacuole	52.42	25.23
CDX72079	Canola	vacuole	22.04	24.85
CDX71901	Canola	extracellular, golgi, vacuole	26.88	24.81
CDY47728	Canola	vacuole	21.51	24.46
CDY23858	Canola	vacuole	24.46	24.33
CDY16615	Canola	endoplasmic reticulum, extracellular, vacuole	25.81	24.3
CDY05993	Canola	endoplasmic reticulum, golgi, vacuole	26.08	24.07
CDY22515	Canola	vacuole	22.58	24.07
CDX79944	Canola	vacuole	23.92	23.73
CDY35420	Canola	vacuole	22.31	23.71
CDX89027	Canola	endoplasmic reticulum, vacuole	25.54	23.51
CDY06143	Canola	vacuole	24.19	23.44
CDY45863	Canola	vacuole	20.43	23.38
CDY47729	Canola	vacuole	20.43	23.38
CDY70367	Canola	cytosol	17.2	23.36
CDX73039	Canola	vacuole	20.43	23.31
CDX73037	Canola	vacuole	20.43	23.17
CDY66189	Canola	vacuole	18.28	22.9
CDX96505	Canola	vacuole	20.16	22.87
CDY45861	Canola	vacuole	20.16	22.73
CDX96507	Canola	vacuole	19.89	22.7
CDX68204	Canola	vacuole	19.62	22.26
CDX72080	Canola	endoplasmic reticulum, extracellular, golgi	22.04	22.22
CDY66188	Canola	vacuole	19.35	21.95
CDX77108	Canola	vacuole	21.77	21.89
CDX96506	Canola	vacuole	19.09	21.85
CDX73038	Canola	vacuole	19.09	21.85
CDY30558	Canola	vacuole	21.77	21.72
CDY06144	Canola	vacuole	21.51	21.68
CDY22517	Canola	vacuole	21.24	21.41
CDY23857	Canola	vacuole	20.7	20.87
CDX79943	Canola	vacuole	20.7	20.87
CDX67673	Canola	vacuole	20.7	20.81
CDY54042	Canola	vacuole	20.43	20.54
CDY30959	Canola	extracellular, golgi, vacuole	20.43	20.54
CDY30962	Canola	vacuole	20.43	20.21
CDY39351	Canola	extracellular, plasma membrane, vacuole	18.82	20.06
CDY30963	Canola	vacuole	20.16	19.95
CDY47397	Canola	vacuole	15.59	19.86
CDX76030	Canola	endoplasmic reticulum, golgi, vacuole	19.89	19.68
CDX76033	Canola	vacuole	19.62	19.41

Protein Annotations

EnsemblPlants:CDX73720	EnsemblPlantsGene:GSBRNA2T00109319001	Gene3D:2.120.10.30	GO:A0A078CAA6	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016844	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042
InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	PANTHER:PTHR10426	PANTHER:PTHR10426:SF58	PFAM:PF03088	ProteinID:CDX73720
ProteinID:CDX73720.1	SEG:seg	SUPFAM:SSF63829	UniParc:UPI0004EE9503	MapMan:50.4.3	:

Description

BnaC08g22830D

Coordinates

chrLK031799:-:2329068..2330413

Molecular Weight (calculated)

41637.5 Da

IEP (calculated)

7.319

GRAVY (calculated)

0.052

Length

372 amino acids

Sequence
(BLAST)

001: MPLLLFSRRF LIFSTIIPFL ASIALYRLDT FDPALLPPKA LDYSTISLPS LVNDKLLTGA ELIGVGLLNS PEDIAYHRES NFIYTGCVDG WVKRVKVTES
101: LTDSVVEDWV NTDGRPLGVA FGLHGEVIVA DAYKGLLNIS GDGKKTELLT DAADGVKFKL ADAVAVADNG VLYFTDASYK YNMRQFAFDI LEGRPHGRLM
201: SFDPTTRTTR VLLKDLYFAN GVSMSPDQTH LIFCETPMRR CSKYYINEER VEVFIQGLPG YPDNIRYDGE GHYWIAMPSG VTVLWKLAFR YPFLRKLTAI
301: AANYGLDPMI FMANAGVLGV DLEGKPIALY HDHKLSHMTT GVKIGRYLYC GSLLHSHIAR LDLLKYPAQK RL

Best Arabidopsis Sequence Match ( AT3G51430.1 )
(BLAST)

001: MPMFYSSRFL FFFTIVPLLV SIALYQLDTF DPAPVPSEAY ASSTTSIPPL ISDKYLTGAE FIGVGLLDKP EDIAYHQDSN LIYTGCIDGW VKRVSVHDSA
101: NDSVVEDWVN TGGRPLGIAF GVHGEVIVAD AYKGLLNISG DGKKTELLTD QAEGVKFKLT DVVAVADNGV LYFTDASYKY TLHQVKFDIL EGKPHGRLMS
201: FDPTTRVTRV LLKDLYFANG VSMSPDQTHL IFCETPMRRC SKYYINEERV EVFIQGLPGY PDNIRYDGDG HYWIAMVSGA STLWRLSMKY PFLRKITAIA
301: AKYGVELMFM KNAGVLQVDL DGNPIAYYHD QRLSHITTGI KIGNYLYCGN ILHSYIIRLD LLKYPAQKKK L

Arabidopsis Description

SSL5Protein STRICTOSIDINE SYNTHASE-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAZ7]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.