Factsheet for PGSC0003DMT400003995

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	cytosol, vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006495
PGSC0003DMT400071510
PGSC0003DMT400073246
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51450.1	PGSC0003DMT400084737	AT1G27300.1	21798944
AT3G51450.1	PGSC0003DMT400006495	AT3G16310.1	21798944
AT3G51450.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT3G51450.1	PGSC0003DMT400073246	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g082900.2.1	Tomato	vacuole	92.25	92.99
VIT_04s0210g00060.t01	Wine grape	cytosol, mitochondrion	45.72	63.57
VIT_04s0210g00100.t01	Wine grape	cytosol	28.34	60.57
VIT_04s0210g00120.t01	Wine grape	vacuole	58.29	57.52
VIT_04s0210g00080.t01	Wine grape	vacuole	58.02	57.26
VIT_04s0210g00050.t01	Wine grape	plastid	60.43	54.2
AT3G51440.1	Thale cress	golgi, vacuole	53.48	53.91
VIT_04s0210g00130.t01	Wine grape	plasma membrane, vacuole	41.18	53.85
CDY16307	Canola	golgi, vacuole	53.21	53.78
CDX73720	Canola	golgi, vacuole	53.48	53.76
VIT_04s0210g00090.t01	Wine grape	mitochondrion, vacuole	27.81	53.06
CDY33280	Canola	golgi, vacuole	52.41	52.97
AT3G51430.1	Thale cress	golgi, vacuole	52.41	52.83
KRH69688	Soybean	golgi, vacuole	51.34	52.32
AT3G51450.1	Thale cress	vacuole	51.87	52.29
AT3G51420.1	Thale cress	golgi, vacuole	51.6	52.16
Bra038899.1-P	Field mustard	golgi, vacuole	51.6	52.02
CDY33279	Canola	golgi, vacuole	51.6	52.02
CDY16306	Canola	golgi, vacuole	48.93	51.26
Os10t0543500-01	Rice	plasma membrane	34.22	50.2
Bra038898.1-P	Field mustard	golgi, vacuole	52.67	49.62
KRH07935	Soybean	endoplasmic reticulum	49.73	49.21
TraesCS1A01G203800.1	Wheat	cytosol, plastid, vacuole	31.02	47.54
HORVU1Hr1G052450.8	Barley	extracellular, golgi, vacuole	46.26	47.01
Bra036798.1-P	Field mustard	vacuole	51.87	46.86
CDX78005	Canola	vacuole	51.87	46.86
TraesCS1D01G207200.2	Wheat	extracellular, golgi, vacuole	45.19	46.05
KRH69689	Soybean	plastid	48.66	45.96
TraesCS1B01G217600.1	Wheat	extracellular, golgi, vacuole	44.92	45.78
GSMUA_AchrUn_...	Banana	plastid	29.14	43.6
OQU92210	Sorghum	golgi, plastid, vacuole	48.4	40.86
VIT_04s0210g00040.t01	Wine grape	cytosol, peroxisome, vacuole	38.77	38.67
PGSC0003DMT400005990	Potato	cytosol	28.34	36.68
VIT_04s0210g00030.t01	Wine grape	vacuole	58.29	28.2
PGSC0003DMT400044684	Potato	vacuole	25.94	27.71
PGSC0003DMT400015199	Potato	vacuole	28.88	27.62
PGSC0003DMT400076777	Potato	vacuole	27.27	27.42
PGSC0003DMT400030927	Potato	golgi, plasma membrane, vacuole	28.34	26.04
PGSC0003DMT400007732	Potato	vacuole	27.01	25.83
PGSC0003DMT400044531	Potato	vacuole	25.67	25.74
PGSC0003DMT400007661	Potato	vacuole	25.67	25.33
PGSC0003DMT400056839	Potato	vacuole	21.12	25.32
PGSC0003DMT400048627	Potato	cytosol, golgi, mitochondrion, vacuole	22.19	24.34
PGSC0003DMT400063286	Potato	vacuole	21.39	23.95
PGSC0003DMT400063277	Potato	vacuole	20.86	23.49
PGSC0003DMT400001736	Potato	cytosol, peroxisome, vacuole	17.38	23.47
PGSC0003DMT400063274	Potato	vacuole	20.86	23.21
PGSC0003DMT400044685	Potato	extracellular	15.51	21.56
PGSC0003DMT400063282	Potato	extracellular, vacuole	8.56	20.65

Protein Annotations

EntrezGene:102588958	Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016020	GO:GO:0016021
GO:GO:0016844	InterPro:IPR011042	UniProt:M0ZMP4	PFAM:PF03088	EnsemblPlantsGene:PGSC0003DMG400001574	PGSC:PGSC0003DMG400001574
EnsemblPlants:PGSC0003DMT400003995	PANTHER:PTHR10426	PANTHER:PTHR10426:SF58	SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase
TMHMM:TMhelix	UniParc:UPI000294E04F	RefSeq:XP_006340819.1	SEG:seg	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400001574]

Coordinates

chr2:-:38712125..38714413

Molecular Weight (calculated)

41720.0 Da

IEP (calculated)

5.486

GRAVY (calculated)

-0.161

Length

374 amino acids

Sequence
(BLAST)

001: MSSPLIFLKP IFISVIIPVI LGTVFYQLDS FDPASYPTHV LSTDPPIVAP KRNNQMLRRS EKIGVNQLLS PEDVAYDQKS GVIYTGCVDG WVKKVKVNES
101: AADSTVEDWV FTGGRPLGLA LGRHGEVIVA DADKGLLLNV TSVGEIKVLT EEAEGLKFKL ADAVDVAEDG IIYFSDASYK YNIEQYIYDI LEGRPNGRLL
201: SYDPSTKQTK TLLSDLYFAN GVAVSPDQNY VIFCETPLRK CKKYYIKGEK KGSVDMFVDN LPGFPDNIRY DGEGHYWIAF ASEKTYSWDL TLRYPFIRKI
301: MAIMVKYVGQ PKAEKNGGVL SVDLQGNPLE HYYDEDLTMV SSGIKIGDHL YCGSVKSPYI LRLNLKQNPA VQTS

Best Arabidopsis Sequence Match ( AT3G51440.1 )
(BLAST)

001: MPVFLSSRFL FFCIIVPLLI SITLYQLDTF DPAHHPADSL ISSTASIPPL INERFLTGAE FIGVGLLNSP EDIAYHEDSG FIYTGCVDGW VKRVKVAESV
101: NDSLVEDLVN TGGRPLGIAF GIHGEVIVAD AYKGLLNISG DGKKTELLTE EADGVRFKLP DAVTVADNGV LYFTDGSYKY NLHQFSFDIL EGKPHGRLMS
201: FDPTTKVTRV LLRDLYFANG VSLSPDQTHL VFCETPIRRC SKYYINGGRV ELFIQGLPGY PDNIRYDGDG HYWIAMPSGV TTLWKLSMKY PFLRKITAMA
301: AKYGYEPMFM ENAGVLQVDL DGNPIAYYHD QALSHITTGV KIGNYLYCGS LWHSHILRLD LLKYPAQNKK L

Arabidopsis Description

SSL6Protein STRICTOSIDINE SYNTHASE-LIKE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD05]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.