Subcellular Localization
min:
: max
Winner_takes_all: golgi, vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 6
- extracellular 5
- vacuole 5
- plasma membrane 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G51430.1 | Thale cress | golgi, vacuole | 82.21 | 82.21 |
| AT3G51450.1 | Thale cress | vacuole | 80.59 | 80.59 |
| CDY16307 | Canola | golgi, vacuole | 78.71 | 78.92 |
| CDY33280 | Canola | golgi, vacuole | 78.44 | 78.65 |
| AT3G51420.1 | Thale cress | golgi, vacuole | 78.17 | 78.38 |
| Bra038899.1-P | Field mustard | golgi, vacuole | 78.17 | 78.17 |
| CDY33279 | Canola | golgi, vacuole | 78.17 | 78.17 |
| CDX73720 | Canola | golgi, vacuole | 77.63 | 77.42 |
| CDY16306 | Canola | golgi, vacuole | 74.12 | 77.03 |
| Bra038898.1-P | Field mustard | golgi, vacuole | 76.28 | 71.28 |
| CDX78005 | Canola | vacuole | 74.93 | 67.15 |
| Bra036798.1-P | Field mustard | vacuole | 74.66 | 66.91 |
| VIT_04s0210g00060.t01 | Wine grape | cytosol, mitochondrion | 39.08 | 53.9 |
| PGSC0003DMT400003995 | Potato | golgi, vacuole | 53.91 | 53.48 |
| VIT_04s0210g00100.t01 | Wine grape | cytosol | 25.07 | 53.14 |
| Solyc02g082900.2.1 | Tomato | vacuole | 52.56 | 52.56 |
| Os10t0543500-01 | Rice | plasma membrane | 35.31 | 51.37 |
| VIT_04s0210g00120.t01 | Wine grape | vacuole | 52.29 | 51.19 |
| VIT_04s0210g00080.t01 | Wine grape | vacuole | 52.02 | 50.92 |
| TraesCS1A01G203800.1 | Wheat | cytosol, plastid, vacuole | 32.08 | 48.77 |
| KRH69688 | Soybean | golgi, vacuole | 47.44 | 47.96 |
| VIT_04s0210g00130.t01 | Wine grape | plasma membrane, vacuole | 36.39 | 47.2 |
| VIT_04s0210g00050.t01 | Wine grape | plastid | 52.83 | 47.0 |
| VIT_04s0210g00090.t01 | Wine grape | mitochondrion, vacuole | 24.8 | 46.94 |
| HORVU1Hr1G052450.8 | Barley | extracellular, golgi, vacuole | 46.36 | 46.74 |
| TraesCS1B01G217600.1 | Wheat | extracellular, golgi, vacuole | 46.09 | 46.59 |
| KRH07935 | Soybean | endoplasmic reticulum | 47.17 | 46.3 |
| TraesCS1D01G207200.2 | Wheat | extracellular, golgi, vacuole | 45.28 | 45.78 |
| GSMUA_AchrUn_... | Banana | plastid | 30.73 | 45.6 |
| KRH69689 | Soybean | plastid | 45.01 | 42.17 |
| OQU92210 | Sorghum | golgi, plastid, vacuole | 46.63 | 39.05 |
| VIT_04s0210g00040.t01 | Wine grape | cytosol, peroxisome, vacuole | 35.58 | 35.2 |
| AT1G74010.1 | Thale cress | vacuole | 22.1 | 25.23 |
| AT1G08470.1 | Thale cress | endoplasmic reticulum, vacuole | 25.88 | 24.62 |
| AT3G57030.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 24.8 | 24.6 |
| AT1G74020.1 | Thale cress | vacuole | 22.1 | 24.48 |
| VIT_04s0210g00030.t01 | Wine grape | vacuole | 50.94 | 24.45 |
| AT5G22020.2 | Thale cress | vacuole | 25.34 | 23.8 |
| AT3G59530.3 | Thale cress | golgi, vacuole | 25.61 | 23.57 |
| AT2G41290.1 | Thale cress | vacuole | 23.45 | 23.14 |
| AT1G74000.1 | Thale cress | vacuole | 19.95 | 22.49 |
| AT3G57020.1 | Thale cress | vacuole | 21.83 | 21.89 |
| AT2G41300.1 | Thale cress | vacuole | 21.02 | 19.8 |
| AT3G57010.1 | Thale cress | extracellular, golgi, vacuole | 19.14 | 18.88 |
Protein Annotations
| Gene3D:2.120.10.30 | MapMan:50.4.3 | InterPro:6-blade_b-propeller_TolB-like | EntrezGene:824307 | ProteinID:AEE78793.1 | EMBL:AF360274 |
| ArrayExpress:AT3G51440 | EnsemblPlantsGene:AT3G51440 | RefSeq:AT3G51440 | TAIR:AT3G51440 | RefSeq:AT3G51440-TAIR-G | EnsemblPlants:AT3G51440.1 |
| TAIR:AT3G51440.1 | EMBL:AY142567 | Unigene:At.645 | ProteinID:CAB63008.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005783 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0009611 | GO:GO:0009615 | GO:GO:0009620 | GO:GO:0009719 | GO:GO:0009723 | GO:GO:0009751 |
| GO:GO:0009753 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016788 | GO:GO:0016844 |
| InterPro:IPR011042 | RefSeq:NP_190712.1 | PFAM:PF03088 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001185 | PO:PO:0005052 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 |
| PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR10426 | PANTHER:PTHR10426:SF58 | UniProt:Q9SD05 |
| SUPFAM:SSF63829 | InterPro:Strictosidine_synth_cons-reg | InterPro:Strictosidine_synthase | TMHMM:TMhelix | UniParc:UPI00000AC618 | : |
Description
SSL6Protein STRICTOSIDINE SYNTHASE-LIKE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD05]
Coordinates
chr3:+:19089026..19090662
Molecular Weight (calculated)
41385.8 Da
IEP (calculated)
6.230
GRAVY (calculated)
0.011
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVFLSSRFL FFCIIVPLLI SITLYQLDTF DPAHHPADSL ISSTASIPPL INERFLTGAE FIGVGLLNSP EDIAYHEDSG FIYTGCVDGW VKRVKVAESV
101: NDSLVEDLVN TGGRPLGIAF GIHGEVIVAD AYKGLLNISG DGKKTELLTE EADGVRFKLP DAVTVADNGV LYFTDGSYKY NLHQFSFDIL EGKPHGRLMS
201: FDPTTKVTRV LLRDLYFANG VSLSPDQTHL VFCETPIRRC SKYYINGGRV ELFIQGLPGY PDNIRYDGDG HYWIAMPSGV TTLWKLSMKY PFLRKITAMA
301: AKYGYEPMFM ENAGVLQVDL DGNPIAYYHD QALSHITTGV KIGNYLYCGS LWHSHILRLD LLKYPAQNKK L
101: NDSLVEDLVN TGGRPLGIAF GIHGEVIVAD AYKGLLNISG DGKKTELLTE EADGVRFKLP DAVTVADNGV LYFTDGSYKY NLHQFSFDIL EGKPHGRLMS
201: FDPTTKVTRV LLRDLYFANG VSLSPDQTHL VFCETPIRRC SKYYINGGRV ELFIQGLPGY PDNIRYDGDG HYWIAMPSGV TTLWKLSMKY PFLRKITAMA
301: AKYGYEPMFM ENAGVLQVDL DGNPIAYYHD QALSHITTGV KIGNYLYCGS LWHSHILRLD LLKYPAQNKK L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.