Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 5
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G217600.1 | Wheat | extracellular, golgi, vacuole | 93.21 | 93.46 |
| TraesCS1D01G207200.2 | Wheat | extracellular, golgi, vacuole | 92.39 | 92.64 |
| TraesCS1A01G203800.1 | Wheat | cytosol, plastid, vacuole | 60.33 | 90.98 |
| Os10t0543500-01 | Rice | plasma membrane | 51.9 | 74.9 |
| OQU92210 | Sorghum | golgi, plastid, vacuole | 74.73 | 62.08 |
| VIT_04s0210g00060.t01 | Wine grape | cytosol, mitochondrion | 40.22 | 55.02 |
| GSMUA_AchrUn_... | Banana | plastid | 36.68 | 54.0 |
| VIT_04s0210g00130.t01 | Wine grape | plasma membrane, vacuole | 37.77 | 48.6 |
| VIT_04s0210g00120.t01 | Wine grape | vacuole | 50.0 | 48.55 |
| VIT_04s0210g00080.t01 | Wine grape | vacuole | 49.73 | 48.28 |
| VIT_04s0210g00090.t01 | Wine grape | mitochondrion, vacuole | 25.54 | 47.96 |
| CDX73720 | Canola | golgi, vacuole | 47.55 | 47.04 |
| AT3G51430.1 | Thale cress | golgi, vacuole | 47.28 | 46.9 |
| AT3G51450.1 | Thale cress | vacuole | 47.01 | 46.63 |
| AT3G51440.1 | Thale cress | golgi, vacuole | 46.74 | 46.36 |
| VIT_04s0210g00100.t01 | Wine grape | cytosol | 22.01 | 46.29 |
| PGSC0003DMT400003995 | Potato | golgi, vacuole | 47.01 | 46.26 |
| AT3G51420.1 | Thale cress | golgi, vacuole | 46.47 | 46.22 |
| CDY16307 | Canola | golgi, vacuole | 46.2 | 45.95 |
| Bra038899.1-P | Field mustard | golgi, vacuole | 46.2 | 45.82 |
| CDY33280 | Canola | golgi, vacuole | 45.92 | 45.68 |
| CDY33279 | Canola | golgi, vacuole | 45.92 | 45.55 |
| KRH07935 | Soybean | endoplasmic reticulum | 46.74 | 45.5 |
| Solyc02g082900.2.1 | Tomato | vacuole | 45.65 | 45.28 |
| KRH69688 | Soybean | golgi, vacuole | 45.11 | 45.23 |
| CDY16306 | Canola | golgi, vacuole | 43.75 | 45.1 |
| VIT_04s0210g00050.t01 | Wine grape | plastid | 49.73 | 43.88 |
| Bra038898.1-P | Field mustard | golgi, vacuole | 44.84 | 41.56 |
| KRH69689 | Soybean | plastid | 43.21 | 40.15 |
| Bra036798.1-P | Field mustard | vacuole | 45.11 | 40.1 |
| CDX78005 | Canola | vacuole | 44.84 | 39.86 |
| VIT_04s0210g00040.t01 | Wine grape | cytosol, peroxisome, vacuole | 34.24 | 33.6 |
| HORVU5Hr1G114720.1 | Barley | plastid | 16.3 | 31.58 |
| HORVU2Hr1G013460.2 | Barley | golgi, mitochondrion, vacuole | 23.37 | 29.55 |
| HORVU5Hr1G058910.2 | Barley | endoplasmic reticulum, extracellular, vacuole | 27.45 | 29.19 |
| HORVU5Hr1G093840.1 | Barley | vacuole | 26.63 | 28.91 |
| HORVU3Hr1G065520.3 | Barley | extracellular | 25.27 | 28.88 |
| HORVU3Hr1G074780.3 | Barley | cytosol, vacuole | 28.53 | 28.07 |
| HORVU2Hr1G064060.1 | Barley | mitochondrion, vacuole | 19.29 | 27.95 |
| HORVU6Hr1G026020.1 | Barley | cytosol | 18.75 | 27.82 |
| HORVU5Hr1G095260.1 | Barley | extracellular | 30.16 | 27.82 |
| HORVU3Hr1G109810.1 | Barley | golgi, vacuole | 26.09 | 27.51 |
| HORVU2Hr1G012970.2 | Barley | mitochondrion | 25.82 | 27.14 |
| HORVU5Hr1G009400.2 | Barley | cytosol, mitochondrion, plastid, vacuole | 9.78 | 26.47 |
| HORVU7Hr1G028580.1 | Barley | golgi, vacuole | 25.27 | 26.42 |
| HORVU5Hr1G091230.1 | Barley | golgi, mitochondrion, plastid, vacuole | 25.27 | 26.12 |
| HORVU5Hr1G058940.2 | Barley | vacuole | 25.54 | 25.61 |
| HORVU5Hr1G114800.1 | Barley | extracellular | 14.67 | 25.12 |
| HORVU5Hr1G078340.1 | Barley | golgi, vacuole | 16.03 | 24.18 |
| HORVU7Hr1G028550.2 | Barley | plastid | 11.41 | 23.6 |
| VIT_04s0210g00030.t01 | Wine grape | vacuole | 48.64 | 23.16 |
| HORVU4Hr1G061230.2 | Barley | peroxisome, vacuole | 26.9 | 23.13 |
| HORVU5Hr1G043200.4 | Barley | vacuole | 22.83 | 22.46 |
| HORVU7Hr1G019170.1 | Barley | cytosol | 8.42 | 18.02 |
| HORVU4Hr1G016850.1 | Barley | cytosol | 7.88 | 16.67 |
| HORVU6Hr1G025030.1 | Barley | cytosol | 4.62 | 15.32 |
Protein Annotations
| Gene3D:2.120.10.30 | MapMan:50.4.3 | InterPro:6-blade_b-propeller_TolB-like | EMBL:AK373962 | UniProt:F2ECT7 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016844 | EnsemblPlantsGene:HORVU1Hr1G052450 |
| EnsemblPlants:HORVU1Hr1G052450.8 | InterPro:IPR011042 | PFAM:PF03088 | PANTHER:PTHR10426 | PANTHER:PTHR10426:SF58 | SUPFAM:SSF63829 |
| SignalP:SignalP-noTM | InterPro:Strictosidine_synth_cons-reg | InterPro:Strictosidine_synthase | TMHMM:TMhelix | UniParc:UPI00020086DB | SEG:seg |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2ECT7]
Coordinates
chrchr1H:-:388873181..388877069
Molecular Weight (calculated)
39394.2 Da
IEP (calculated)
4.850
GRAVY (calculated)
0.075
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MATGLGVAAK AVLLVLAPVV ISVALYSPKD FSPAALPPEY SSFGGDVSAP RHDARVLAAS ERIGEGLLPG PEDLAYDAAG GWLYTGCADG WVRRVSVPGG
101: DVEDWAYTGG RPLGVVLAGE GGIIVADADK GLLKVRPDKT VQLLTDAAEG LKFALTDGVD IAADGTIYFT DASYKYSLAK YMLDVLEARP HGRLMSFDPS
201: THRTTVLARD LYFANGVAVA PDQDSLIFCE TIMRRCSRYH IRGDKAGTVE SFINSLPGMP DNIRYDGEGR YWIALSSGRT LQSDVLMWSP LVRKLVYMVE
301: KYVTAVPQGL RDSGTMSVAL NGEPVTMYTD PGLALATGAL KVGDYLYYGS LASSYISRVD LTKLPIEA
101: DVEDWAYTGG RPLGVVLAGE GGIIVADADK GLLKVRPDKT VQLLTDAAEG LKFALTDGVD IAADGTIYFT DASYKYSLAK YMLDVLEARP HGRLMSFDPS
201: THRTTVLARD LYFANGVAVA PDQDSLIFCE TIMRRCSRYH IRGDKAGTVE SFINSLPGMP DNIRYDGEGR YWIALSSGRT LQSDVLMWSP LVRKLVYMVE
301: KYVTAVPQGL RDSGTMSVAL NGEPVTMYTD PGLALATGAL KVGDYLYYGS LASSYISRVD LTKLPIEA
001: MVLFFSTRFL FFSIFFPCLI SITLYQLDSF EPASLPADSL ITSPTSIPPL LNDRFLTGAE FIGVGLLNNP EDIAYHKDSN LIYTGCVDGW VKRVSVHDSA
101: NDSIVEDWVN TGGRPLGIAF GLHGEVIVAD ANKGLLSISD GGKKTELLTD EADGVRFKLT DAVTVADNGV LYFTDASSKY DFYQFIFDFL EGKPHGRVMS
201: FDPTTRATRV LLKDLYFANG ISMSPDQTHF VFCETIMRRC SKYYISEERV EVFIQGLPGY PDNIRYDGDG HYWIALISEV TTSWKLSMKY LFLRKLIYMA
301: AKYGVELLSI KNAAVLQVDL DGNPIAMYHD HPFSHITSGV KIGNHLYFGS LLHSYITRLD LLKYPAQKKL
101: NDSIVEDWVN TGGRPLGIAF GLHGEVIVAD ANKGLLSISD GGKKTELLTD EADGVRFKLT DAVTVADNGV LYFTDASSKY DFYQFIFDFL EGKPHGRVMS
201: FDPTTRATRV LLKDLYFANG ISMSPDQTHF VFCETIMRRC SKYYISEERV EVFIQGLPGY PDNIRYDGDG HYWIALISEV TTSWKLSMKY LFLRKLIYMA
301: AKYGVELLSI KNAAVLQVDL DGNPIAMYHD HPFSHITSGV KIGNHLYFGS LLHSYITRLD LLKYPAQKKL
Arabidopsis Description
SSL4SSL4 [Source:UniProtKB/TrEMBL;Acc:A0A178VDG6]
SUBAcon: [golgi,vacuole]
SUBAcon: [golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.