Subcellular Localization
min:
: max
Winner_takes_all: golgi, vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 6
- extracellular 5
- vacuole 5
- plasma membrane 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G51440.1 | Thale cress | golgi, vacuole | 78.38 | 78.17 |
| AT3G51430.1 | Thale cress | golgi, vacuole | 77.57 | 77.36 |
| CDY33279 | Canola | golgi, vacuole | 76.76 | 76.55 |
| Bra038899.1-P | Field mustard | golgi, vacuole | 76.76 | 76.55 |
| AT3G51450.1 | Thale cress | vacuole | 75.41 | 75.2 |
| CDY16306 | Canola | golgi, vacuole | 72.43 | 75.07 |
| CDY16307 | Canola | golgi, vacuole | 74.32 | 74.32 |
| CDY33280 | Canola | golgi, vacuole | 74.05 | 74.05 |
| CDX73720 | Canola | golgi, vacuole | 73.78 | 73.39 |
| Bra038898.1-P | Field mustard | golgi, vacuole | 71.62 | 66.75 |
| CDX78005 | Canola | vacuole | 72.43 | 64.73 |
| Bra036798.1-P | Field mustard | vacuole | 72.16 | 64.49 |
| VIT_04s0210g00060.t01 | Wine grape | cytosol, mitochondrion | 37.57 | 51.67 |
| PGSC0003DMT400003995 | Potato | golgi, vacuole | 52.16 | 51.6 |
| Solyc02g082900.2.1 | Tomato | vacuole | 51.62 | 51.48 |
| Os10t0543500-01 | Rice | plasma membrane | 34.86 | 50.59 |
| VIT_04s0210g00100.t01 | Wine grape | cytosol | 23.51 | 49.71 |
| VIT_04s0210g00120.t01 | Wine grape | vacuole | 50.27 | 49.08 |
| VIT_04s0210g00080.t01 | Wine grape | vacuole | 50.0 | 48.81 |
| VIT_04s0210g00090.t01 | Wine grape | mitochondrion, vacuole | 25.41 | 47.96 |
| TraesCS1A01G203800.1 | Wheat | cytosol, plastid, vacuole | 31.62 | 47.95 |
| KRH69688 | Soybean | golgi, vacuole | 47.3 | 47.68 |
| VIT_04s0210g00130.t01 | Wine grape | plasma membrane, vacuole | 36.22 | 46.85 |
| KRH07935 | Soybean | endoplasmic reticulum | 47.57 | 46.56 |
| HORVU1Hr1G052450.8 | Barley | extracellular, golgi, vacuole | 46.22 | 46.47 |
| TraesCS1B01G217600.1 | Wheat | extracellular, golgi, vacuole | 45.68 | 46.05 |
| VIT_04s0210g00050.t01 | Wine grape | plastid | 51.62 | 45.8 |
| TraesCS1D01G207200.2 | Wheat | extracellular, golgi, vacuole | 45.41 | 45.78 |
| GSMUA_AchrUn_... | Banana | plastid | 30.0 | 44.4 |
| KRH69689 | Soybean | plastid | 43.24 | 40.4 |
| OQU92210 | Sorghum | golgi, plastid, vacuole | 47.3 | 39.5 |
| VIT_04s0210g00040.t01 | Wine grape | cytosol, peroxisome, vacuole | 36.76 | 36.27 |
| AT1G74010.1 | Thale cress | vacuole | 22.7 | 25.85 |
| AT1G08470.1 | Thale cress | endoplasmic reticulum, vacuole | 25.95 | 24.62 |
| AT3G57030.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 24.86 | 24.6 |
| AT5G22020.2 | Thale cress | vacuole | 26.22 | 24.56 |
| VIT_04s0210g00030.t01 | Wine grape | vacuole | 50.81 | 24.32 |
| AT1G74020.1 | Thale cress | vacuole | 21.62 | 23.88 |
| AT3G57020.1 | Thale cress | vacuole | 22.43 | 22.43 |
| AT2G41290.1 | Thale cress | vacuole | 22.7 | 22.34 |
| AT1G74000.1 | Thale cress | vacuole | 19.73 | 22.19 |
| AT3G59530.3 | Thale cress | golgi, vacuole | 23.78 | 21.84 |
| AT2G41300.1 | Thale cress | vacuole | 21.08 | 19.8 |
| AT3G57010.1 | Thale cress | extracellular, golgi, vacuole | 19.19 | 18.88 |
Protein Annotations
| Gene3D:2.120.10.30 | MapMan:50.4.3 | InterPro:6-blade_b-propeller_TolB-like | EntrezGene:824305 | UniProt:A0A178VDG6 | ProteinID:AEE78790.1 |
| ArrayExpress:AT3G51420 | EnsemblPlantsGene:AT3G51420 | RefSeq:AT3G51420 | TAIR:AT3G51420 | RefSeq:AT3G51420-TAIR-G | EnsemblPlants:AT3G51420.1 |
| TAIR:AT3G51420.1 | EMBL:AY087809 | EMBL:BT024894 | ProteinID:CAB63006.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005783 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009611 | GO:GO:0009719 |
| GO:GO:0009753 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0016788 | GO:GO:0016844 | InterPro:IPR011042 |
| RefSeq:NP_190710.1 | ProteinID:OAP03824.1 | PFAM:PF03088 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR10426 | PANTHER:PTHR10426:SF58 | UniProt:Q9SD07 | SUPFAM:SSF63829 |
| Symbol:SSL4 | InterPro:Strictosidine_synth_cons-reg | InterPro:Strictosidine_synthase | UniParc:UPI00000AAB8A | SEG:seg | : |
Description
SSL4SSL4 [Source:UniProtKB/TrEMBL;Acc:A0A178VDG6]
Coordinates
chr3:+:19083980..19086300
Molecular Weight (calculated)
41597.9 Da
IEP (calculated)
5.952
GRAVY (calculated)
0.054
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLFFSTRFL FFSIFFPCLI SITLYQLDSF EPASLPADSL ITSPTSIPPL LNDRFLTGAE FIGVGLLNNP EDIAYHKDSN LIYTGCVDGW VKRVSVHDSA
101: NDSIVEDWVN TGGRPLGIAF GLHGEVIVAD ANKGLLSISD GGKKTELLTD EADGVRFKLT DAVTVADNGV LYFTDASSKY DFYQFIFDFL EGKPHGRVMS
201: FDPTTRATRV LLKDLYFANG ISMSPDQTHF VFCETIMRRC SKYYISEERV EVFIQGLPGY PDNIRYDGDG HYWIALISEV TTSWKLSMKY LFLRKLIYMA
301: AKYGVELLSI KNAAVLQVDL DGNPIAMYHD HPFSHITSGV KIGNHLYFGS LLHSYITRLD LLKYPAQKKL
101: NDSIVEDWVN TGGRPLGIAF GLHGEVIVAD ANKGLLSISD GGKKTELLTD EADGVRFKLT DAVTVADNGV LYFTDASSKY DFYQFIFDFL EGKPHGRVMS
201: FDPTTRATRV LLKDLYFANG ISMSPDQTHF VFCETIMRRC SKYYISEERV EVFIQGLPGY PDNIRYDGDG HYWIALISEV TTSWKLSMKY LFLRKLIYMA
301: AKYGVELLSI KNAAVLQVDL DGNPIAMYHD HPFSHITSGV KIGNHLYFGS LLHSYITRLD LLKYPAQKKL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.