Factsheet for GSMUA_AchrUn_randomP02250_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P08270_001
GSMUA_Achr4P10230_001
GSMUA_Achr4P15460_001
GSMUA_Achr6P14800_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51450.1	GSMUA_Achr4P08270_001	AT3G16310.1	21798944
AT3G51450.1	GSMUA_Achr4P15460_001	AT3G16310.1	21798944
AT3G51450.1	GSMUA_Achr6P14800_001	AT3G16310.1	21798944
AT3G51450.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0210g00090.t01	Wine grape	mitochondrion, vacuole	36.8	46.94
VIT_04s0210g00130.t01	Wine grape	plasma membrane, vacuole	49.2	43.01
TraesCS1D01G207200.2	Wheat	extracellular, golgi, vacuole	55.6	37.87
TraesCS1B01G217600.1	Wheat	extracellular, golgi, vacuole	54.0	36.78
HORVU1Hr1G052450.8	Barley	extracellular, golgi, vacuole	54.0	36.68
VIT_04s0210g00120.t01	Wine grape	vacuole	50.8	33.51
VIT_04s0210g00080.t01	Wine grape	vacuole	50.8	33.51
VIT_04s0210g00060.t01	Wine grape	cytosol, mitochondrion	35.2	32.71
VIT_04s0210g00040.t01	Wine grape	cytosol, peroxisome, vacuole	48.4	32.27
VIT_04s0210g00050.t01	Wine grape	plastid	52.8	31.65
OQU92210	Sorghum	golgi, plastid, vacuole	55.6	31.38
AT3G51440.1	Thale cress	golgi, vacuole	45.6	30.73
AT3G51450.1	Thale cress	vacuole	45.2	30.46
AT3G51420.1	Thale cress	golgi, vacuole	44.4	30.0
AT3G51430.1	Thale cress	golgi, vacuole	44.4	29.92
CDX73720	Canola	golgi, vacuole	44.4	29.84
KRH69688	Soybean	golgi, vacuole	43.6	29.7
KRH07935	Soybean	endoplasmic reticulum	44.8	29.63
TraesCS1A01G203800.1	Wheat	cytosol, plastid, vacuole	28.8	29.51
CDY16307	Canola	golgi, vacuole	43.2	29.19
CDY33280	Canola	golgi, vacuole	43.2	29.19
PGSC0003DMT400003995	Potato	golgi, vacuole	43.6	29.14
Bra038899.1-P	Field mustard	golgi, vacuole	43.2	29.11
CDY33279	Canola	golgi, vacuole	43.2	29.11
Os10t0543500-01	Rice	plasma membrane	29.6	29.02
Solyc02g082900.2.1	Tomato	vacuole	42.0	28.3
CDY16306	Canola	golgi, vacuole	38.8	27.17
Bra038898.1-P	Field mustard	golgi, vacuole	42.8	26.95
Bra036798.1-P	Field mustard	vacuole	44.4	26.81
KRH69689	Soybean	plastid	42.4	26.77
CDX78005	Canola	vacuole	44.0	26.57
GSMUA_Achr11P...	Banana	golgi, vacuole	34.8	24.23
GSMUA_Achr3P06240_001	Banana	cytosol, mitochondrion, peroxisome, vacuole	28.4	22.9
GSMUA_Achr5P05340_001	Banana	vacuole	29.2	20.33
GSMUA_Achr3P30810_001	Banana	endoplasmic reticulum, vacuole	30.0	19.28
GSMUA_Achr11P...	Banana	golgi, vacuole	26.4	17.19
GSMUA_Achr8P04740_001	Banana	endoplasmic reticulum, golgi, vacuole	27.6	16.63
VIT_04s0210g00030.t01	Wine grape	vacuole	50.8	16.43
VIT_04s0210g00100.t01	Wine grape	cytosol	10.0	14.29

Protein Annotations

Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016020	GO:GO:0016021	GO:GO:0016844
EnsemblPlantsGene:GSMUA_AchrUn_randomG02250_001	EnsemblPlants:GSMUA_AchrUn_randomP02250_001	EnsemblPlants:GSMUA_AchrUn_randomT02250_001	InterPro:IPR011042	UniProt:M0U5N7	PFAM:PF03088
PANTHER:PTHR10426	PANTHER:PTHR10426:SF58	SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	TMHMM:TMhelix
UniParc:UPI0002949626	SEG:seg	:	:	:	:

Description

Putative Adipocyte plasma membrane-associated protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG02250_001]

Coordinates

chrchrUn_random:+:11015415..11016434

Molecular Weight (calculated)

27143.4 Da

IEP (calculated)

4.467

GRAVY (calculated)

-0.020

Length

250 amino acids

Sequence
(BLAST)

001: MADSNPSPAA PAPNRTLRRP SWPIIGALLL ILVPIVISIV VNDPNGFDPA PLPADYSFSA SLAVAERHDR ILASSKRVGE GRLPGPEDLA YDKARGFLYT
101: GCSDGWIRRV SLKDEKMEVE DWAYVGGRPL GVALGPGGDL VVAESNNGLM IVKPDQSVAM LTDEADGLMF RLTDGVDVAS DGLIYFTDAS YKFNLDTHIL
201: DILEGRPHGR LMSFDSSTNQ TSVLLRDLYF ANGVSLSPDQ RFLIFCETTL

Best Arabidopsis Sequence Match ( AT3G51430.1 )
(BLAST)

001: MPMFYSSRFL FFFTIVPLLV SIALYQLDTF DPAPVPSEAY ASSTTSIPPL ISDKYLTGAE FIGVGLLDKP EDIAYHQDSN LIYTGCIDGW VKRVSVHDSA
101: NDSVVEDWVN TGGRPLGIAF GVHGEVIVAD AYKGLLNISG DGKKTELLTD QAEGVKFKLT DVVAVADNGV LYFTDASYKY TLHQVKFDIL EGKPHGRLMS
201: FDPTTRVTRV LLKDLYFANG VSMSPDQTHL IFCETPMRRC SKYYINEERV EVFIQGLPGY PDNIRYDGDG HYWIAMVSGA STLWRLSMKY PFLRKITAIA
301: AKYGVELMFM KNAGVLQVDL DGNPIAYYHD QRLSHITTGI KIGNYLYCGN ILHSYIIRLD LLKYPAQKKK L

Arabidopsis Description

SSL5Protein STRICTOSIDINE SYNTHASE-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAZ7]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.