CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, vacuole

Predictor Summary:

plastid 3
mitochondrion 2
vacuole 3
extracellular 2
endoplasmic reticulum 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid, vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
EES02290
EES05123
EES19830

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51450.1	EES05123	AT1G27300.1	21798944
AT3G51450.1	EES02290	AT3G16310.1	21798944
AT3G51450.1	EES19830	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G207200.2	Wheat	extracellular, golgi, vacuole	63.21	76.29
TraesCS1A01G203800.1	Wheat	cytosol, plastid, vacuole	41.76	75.82
TraesCS1B01G217600.1	Wheat	extracellular, golgi, vacuole	62.75	75.75
Os10t0543500-01	Rice	plasma membrane	43.34	75.29
HORVU1Hr1G052450.8	Barley	extracellular, golgi, vacuole	62.08	74.73
VIT_04s0210g00060.t01	Wine grape	cytosol, mitochondrion	35.67	58.74
GSMUA_AchrUn_...	Banana	plastid	31.38	55.6
VIT_04s0210g00100.t01	Wine grape	cytosol	21.44	54.29
VIT_04s0210g00120.t01	Wine grape	vacuole	44.7	52.24
VIT_04s0210g00080.t01	Wine grape	vacuole	44.47	51.98
VIT_04s0210g00130.t01	Wine grape	plasma membrane, vacuole	32.28	50.0
PGSC0003DMT400003995	Potato	golgi, vacuole	40.86	48.4
CDY16307	Canola	golgi, vacuole	40.41	48.38
AT3G51430.1	Thale cress	golgi, vacuole	40.41	48.25
CDY33280	Canola	golgi, vacuole	40.18	48.11
VIT_04s0210g00090.t01	Wine grape	mitochondrion, vacuole	21.22	47.96
AT3G51420.1	Thale cress	golgi, vacuole	39.5	47.3
VIT_04s0210g00050.t01	Wine grape	plastid	44.47	47.24
Solyc02g082900.2.1	Tomato	vacuole	39.5	47.17
KRH69688	Soybean	golgi, vacuole	38.83	46.87
CDX73720	Canola	golgi, vacuole	39.28	46.77
AT3G51440.1	Thale cress	golgi, vacuole	39.05	46.63
KRH07935	Soybean	endoplasmic reticulum	39.73	46.56
CDY33279	Canola	golgi, vacuole	38.15	45.55
Bra038899.1-P	Field mustard	golgi, vacuole	38.15	45.55
AT3G51450.1	Thale cress	vacuole	37.47	44.74
KRH69689	Soybean	plastid	39.95	44.7
CDY16306	Canola	golgi, vacuole	35.67	44.26
Bra038898.1-P	Field mustard	golgi, vacuole	38.6	43.07
Bra036798.1-P	Field mustard	vacuole	37.92	40.58
CDX78005	Canola	vacuole	37.7	40.34
VIT_04s0210g00040.t01	Wine grape	cytosol, peroxisome, vacuole	31.38	37.07
KXG36678	Sorghum	vacuole	27.99	33.7
KXG36676	Sorghum	vacuole	26.86	33.06
OQU75879	Sorghum	vacuole	20.54	29.74
OQU76676	Sorghum	extracellular, golgi, vacuole	23.02	29.48
EER90869	Sorghum	vacuole	26.19	29.15
KXG39404	Sorghum	golgi, vacuole	21.9	28.45
EES01763	Sorghum	vacuole	21.9	28.12
EES17427	Sorghum	golgi, vacuole	21.67	27.99
EES05427	Sorghum	vacuole	21.67	27.91
OQU85880	Sorghum	golgi, vacuole	21.67	27.75
EER90208	Sorghum	vacuole	21.67	27.75
EES07680	Sorghum	golgi, vacuole	21.67	27.75
EES05895	Sorghum	golgi, vacuole	21.67	27.75
EER96671	Sorghum	endoplasmic reticulum, golgi	21.67	27.43
OQU87434	Sorghum	golgi, vacuole	21.9	27.4
EES01841	Sorghum	vacuole	21.44	27.38
EER96672	Sorghum	vacuole	22.57	27.32
OQU79673	Sorghum	vacuole	20.99	27.19
VIT_04s0210g00030.t01	Wine grape	vacuole	46.95	26.91
EES07950	Sorghum	vacuole	22.12	25.0
EER92507	Sorghum	cytosol, golgi, mitochondrion, vacuole	23.25	25.0
KXG27696	Sorghum	vacuole	21.9	24.87
EES17425	Sorghum	extracellular	12.87	21.76

Protein Annotations

Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	UniProt:A0A1Z5S8F8	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016020	GO:GO:0016021
GO:GO:0016844	InterPro:IPR011042	EnsemblPlants:OQU92210	ProteinID:OQU92210	ProteinID:OQU92210.1	PFAM:PF03088
PANTHER:PTHR10426	PANTHER:PTHR10426:SF58	EnsemblPlantsGene:SORBI_3001G310500	SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase
TMHMM:TMhelix	UniParc:UPI000B8B96DB	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:59691558..59693360

Molecular Weight (calculated)

47955.6 Da

IEP (calculated)

8.247

GRAVY (calculated)

-0.063

Length

443 amino acids

Sequence
(BLAST)

001: MSSPRALLVV LHYTRLCPLS PRPGQALANK HDVAYRIVSS TQTGVTTPRT SGAGGRSSSP CVLCLLCGAS LLATRSTMAA GLGFLKAVAL VLAPVVLAVV
101: LYSPRDFSPA PMPPEYSYGP DVSAPRHERR ALQRSERVGE GRLPGPEDLA FDAAGGWLYT GCADGWVRRV SVPGGDVEDW VRTGGRPLGL VLASDGALIV
201: ADANIGLLKV SPDPDRKVEL LTDSAEGLKF ALTDGVDVAG DGTIYFTDAS YKYNLDNHMT DILEARPHGR LMSFDPSTRR TAVLARDLYF ANGVSVSPDQ
301: SSLIYCETVM KRCSRYHIAG EKKGTIQKFI DNLPGFPDNI RYDGEGRYWI ALSAGRTLQW DLLMKYPFIR KLVYLAEKFV AVPHALKNSG AMSVALDGKP
401: VTMYSDQGLA LATGWLKVGE HLYYGSLTES YLSKIDLTKS SVE

Best Arabidopsis Sequence Match ( AT3G51420.1 )
(BLAST)

001: MVLFFSTRFL FFSIFFPCLI SITLYQLDSF EPASLPADSL ITSPTSIPPL LNDRFLTGAE FIGVGLLNNP EDIAYHKDSN LIYTGCVDGW VKRVSVHDSA
101: NDSIVEDWVN TGGRPLGIAF GLHGEVIVAD ANKGLLSISD GGKKTELLTD EADGVRFKLT DAVTVADNGV LYFTDASSKY DFYQFIFDFL EGKPHGRVMS
201: FDPTTRATRV LLKDLYFANG ISMSPDQTHF VFCETIMRRC SKYYISEERV EVFIQGLPGY PDNIRYDGDG HYWIALISEV TTSWKLSMKY LFLRKLIYMA
301: AKYGVELLSI KNAAVLQVDL DGNPIAMYHD HPFSHITSGV KIGNHLYFGS LLHSYITRLD LLKYPAQKKL

Arabidopsis Description

SSL4SSL4 [Source:UniProtKB/TrEMBL;Acc:A0A178VDG6]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.