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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, vacuole

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 7
  • plasma membrane 5
  • golgi 6
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, vacuole
Any Predictor:plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:vacuole
Plant-mPloc:vacuole
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES07680 Sorghum golgi, vacuole 98.55 98.55
EER90208 Sorghum vacuole 97.4 97.4
EES05895 Sorghum golgi, vacuole 96.82 96.82
EES05427 Sorghum vacuole 93.64 94.19
TraesCS7A01G138300.1 Wheat cytosol 45.95 76.08
TraesCS7A01G138700.1 Wheat cytosol 45.66 75.6
TraesCS7D01G076600.1 Wheat cytosol 44.8 74.16
TraesCSU01G240600.1 Wheat cytosol 40.46 74.07
TraesCSU01G255900.1 Wheat cytosol 40.46 74.07
TraesCS7D01G076500.1 Wheat cytosol 39.88 72.63
TraesCS7D01G140500.1 Wheat golgi, vacuole 70.52 70.72
TraesCS3D01G503900.1 Wheat nucleus 63.01 70.1
TraesCSU01G104000.1 Wheat golgi, vacuole 70.23 69.83
TraesCS7D01G140000.1 Wheat golgi, vacuole 69.65 69.25
TraesCS7D01G139900.1 Wheat vacuole 69.36 68.97
TraesCS3D01G504000.1 Wheat vacuole 68.5 68.7
TraesCS7A01G138800.1 Wheat golgi, vacuole 60.4 68.52
TraesCS7D01G140600.1 Wheat endoplasmic reticulum, plasma membrane 60.69 68.4
TraesCS3A01G496700.1 Wheat golgi, vacuole 67.92 68.12
TraesCS3A01G298200.1 Wheat cytosol 61.85 67.51
TraesCS3A01G496900.1 Wheat vacuole 67.63 66.86
TraesCS7D01G075900.1 Wheat vacuole 66.47 66.67
TraesCS3D01G303900.1 Wheat cytosol 61.56 66.56
TraesCS5B01G330900.1 Wheat extracellular, vacuole 35.55 66.49
OQU76676 Sorghum extracellular, golgi, vacuole 66.19 66.19
TraesCS1A01G437900.1 Wheat cytosol 35.55 66.13
TraesCS1A01G026500.1 Wheat vacuole 65.9 66.09
TraesCSU01G223800.1 Wheat vacuole 65.9 66.09
Os07t0543600-00 Rice golgi, vacuole 66.76 66.0
TraesCS7D01G076000.1 Wheat vacuole 64.45 65.4
TraesCS2A01G260200.1 Wheat mitochondrion, vacuole 60.4 60.4
OQU75879 Sorghum vacuole 46.24 52.29
KXG39404 Sorghum golgi, vacuole 51.45 52.2
EES01841 Sorghum vacuole 51.73 51.59
EES01763 Sorghum vacuole 50.58 50.72
OQU79673 Sorghum vacuole 50.0 50.58
EES17427 Sorghum golgi, vacuole 49.42 49.85
OQU87434 Sorghum golgi, vacuole 49.71 48.59
GSMUA_Achr3P06240_001 Banana cytosol, mitochondrion, peroxisome, vacuole 42.77 47.74
EER96671 Sorghum endoplasmic reticulum, golgi 47.98 47.43
EER96672 Sorghum vacuole 46.24 43.72
GSMUA_Achr5P05340_001 Banana vacuole 44.51 42.9
EES17425 Sorghum extracellular 32.08 42.37
VIT_13s0074g00070.t01 Wine grape vacuole 31.79 40.15
VIT_10s0042g00010.t01 Wine grape vacuole 35.84 39.37
VIT_10s0042g00030.t01 Wine grape vacuole 30.35 38.46
VIT_13s0074g00080.t01 Wine grape vacuole 35.55 38.2
VIT_00s0575g00020.t01 Wine grape vacuole 35.26 37.89
VIT_17s0000g04580.t01 Wine grape extracellular, vacuole 19.65 37.57
VIT_10s0071g00020.t01 Wine grape vacuole 33.53 37.54
VIT_00s0575g00010.t01 Wine grape vacuole 33.81 37.5
VIT_10s0042g00020.t01 Wine grape vacuole 34.68 37.27
VIT_10s0042g00050.t01 Wine grape vacuole 34.68 37.27
Bra008125.1-P Field mustard cytosol, peroxisome, vacuole 25.14 37.02
VIT_10s0071g00010.t01 Wine grape vacuole 34.39 36.96
PGSC0003DMT400056839 Potato vacuole 33.24 36.86
VIT_17s0000g04600.t01 Wine grape vacuole 36.42 36.73
KRH07462 Soybean vacuole 35.55 35.45
AT1G74010.1 Thale cress vacuole 32.95 35.08
PGSC0003DMT400063282 Potato extracellular, vacuole 15.61 34.84
EER90869 Sorghum vacuole 39.88 34.67
KRH45407 Soybean nucleus 34.68 34.38
Bra003820.1-P Field mustard vacuole 32.08 34.37
Solyc03g114550.1.1 Tomato vacuole 27.17 34.31
CDX96505 Canola vacuole 32.37 34.15
KRH03206 Soybean vacuole 32.95 33.93
CDX96506 Canola vacuole 31.79 33.85
CDY47729 Canola vacuole 31.79 33.85
CDX73037 Canola vacuole 32.08 33.84
Bra015943.1-P Field mustard vacuole 31.79 33.74
CDX96507 Canola vacuole 31.79 33.74
AT1G74000.1 Thale cress vacuole 32.08 33.74
Bra008126.1-P Field mustard vacuole 31.79 33.64
CDY47728 Canola vacuole 31.79 33.64
Solyc12g039070.1.1 Tomato nucleus 32.37 33.63
PGSC0003DMT400001736 Potato cytosol, peroxisome, vacuole 26.88 33.57
Bra008124.1-P Field mustard vacuole 31.5 33.54
CDX73038 Canola vacuole 31.5 33.54
Bra008127.1-P Field mustard vacuole 31.79 33.54
CDX68204 Canola vacuole 31.79 33.54
KRH54773 Soybean vacuole 32.66 33.53
VIT_10s0071g00250.t01 Wine grape vacuole 32.95 33.53
KRH56734 Soybean vacuole 32.95 33.33
CDY45863 Canola vacuole 31.21 33.23
CDX73039 Canola vacuole 31.21 33.13
CDY45861 Canola vacuole 31.5 33.03
Solyc03g114560.2.1 Tomato extracellular 31.21 33.03
CDY66189 Canola vacuole 28.32 33.0
VIT_17s0000g04610.t01 Wine grape vacuole 34.97 32.97
CDY66188 Canola vacuole 31.21 32.93
EES07950 Sorghum vacuole 36.99 32.65
KXG27696 Sorghum vacuole 36.71 32.56
AT1G74020.1 Thale cress vacuole 31.5 32.54
PGSC0003DMT400063277 Potato vacuole 31.21 32.53
Solyc03g114530.2.1 Tomato vacuole 31.21 32.53
PGSC0003DMT400063274 Potato vacuole 31.5 32.44
EER92507 Sorghum cytosol, golgi, mitochondrion, vacuole 38.15 32.04
Solyc03g114540.1.1 Tomato vacuole 30.92 31.85
PGSC0003DMT400063286 Potato vacuole 30.64 31.74
HORVU4Hr1G016850.1 Barley cytosol 14.74 29.31
KRH63133 Soybean peroxisome, vacuole 14.45 28.9
VIT_17s0000g04590.t01 Wine grape endoplasmic reticulum, peroxisome, vacuole 36.42 27.81
KXG36678 Sorghum vacuole 25.72 24.18
KXG36676 Sorghum vacuole 25.14 24.17
OQU92210 Sorghum golgi, plastid, vacuole 27.75 21.67
Bra015944.1-P Field mustard vacuole 30.92 17.92
Protein Annotations
Gene3D:2.120.10.30MapMan:50.4.3InterPro:6-blade_b-propeller_TolB-likeEntrezGene:8082740UniProt:A0A1Z5RQ52GO:GO:0003674
GO:GO:0003824GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0016844InterPro:IPR011042
EnsemblPlants:OQU85880ProteinID:OQU85880ProteinID:OQU85880.1PFAM:PF03088PANTHER:PTHR10426PANTHER:PTHR10426:SF28
EnsemblPlantsGene:SORBI_3004G329600SUPFAM:SSF63829SignalP:SignalP-noTMInterPro:Strictosidine_synth_cons-regInterPro:Strictosidine_synthaseTMHMM:TMhelix
UniParc:UPI0001A85B73RefSeq:XP_002452976.1SEG:seg:::
Description
hypothetical protein
Coordinates
chr4:+:66353670..66354766
Molecular Weight (calculated)
37339.9 Da
IEP (calculated)
9.053
GRAVY (calculated)
-0.195
Length
346 amino acids
Sequence
(BLAST)
001: MAIHKLARTL AILCLAVLLL LLPCAARPIS ETSTIDGSRS KHLPLRGSML RGPESVAFDG AGAGPYSGVS DGRVLKWNGF ARGWSTYAYS PGYDAEACTA
101: SRARPAELTE SKCGRPLGLR FHRRSGNLYI ADAYKGLMRV RPGGGEATVL AAEVDGVPLR FTNGVDVDQV TGDVFFTDSS MNYPRSQHER VTATGDSSGR
201: LMKYDPRTGQ VTVLQAGITY PNGLAISADR THLVVALTGP CKLMRYWIEG PKAGTSEHLA DLPGYPDNVR ADGRGGFWVA LHREKMELPF GPDSHLLAVR
301: VGADGQMVQV MKGPKSVRPT EVVERDGGKL YMGSVELPYV AVVREY
Best Arabidopsis Sequence Match ( AT1G08470.1 )
(BLAST)
001: MAMSILAKIF LVFAIYCAID PFSHSSISKF PDFKTYKIDM PPLSSLPKER DRQNLLQNSE IRFLNEVQGP ESIAFDPQGR GPYTGVADGR ILFWNGTRWT
101: DFAYTSNNRS ELCDPKPSLL DYLKDEDICG RPLGLRFDKK NGDLYIADAY LGIMKVGPEG GLATSVTNEA DGVPLRFTND LDIDDEGNVY FTDSSSFFQR
201: RKFMLLIVSG EDSGRVLKYN PKTKETTTLV RNLQFPNGLS LGKDGSFFIF CEGSIGRLRK YWLKGEKAGT SEVVALLHGF PDNIRTNKDG DFWVAVHCHR
301: NIFTHLMAHY PRVRKFFLKL PISVKFQYLL QVGGWPHAVA VKYSEEGKVL KVLEDSKGKV VKAVSEVEEK DGKLWMGSVL MSFIAVYDLP
Arabidopsis Description
SSL3SSL3 [Source:UniProtKB/TrEMBL;Acc:A0A178WK70]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.