Factsheet for TraesCS3D01G503900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G558800.1	Wheat	cytosol	64.63	96.17
TraesCS3B01G559000.1	Wheat	cytosol	57.56	95.72
TraesCS7D01G076600.1	Wheat	cytosol	59.16	88.04
TraesCS7D01G076500.1	Wheat	cytosol	52.73	86.32
TraesCS3D01G504000.1	Wheat	vacuole	92.6	83.48
TraesCS3A01G496700.1	Wheat	golgi, vacuole	91.96	82.9
TraesCS3B01G559100.1	Wheat	vacuole	91.0	82.03
TraesCS3A01G496900.1	Wheat	vacuole	91.64	81.43
HORVU3Hr1G109810.1	Barley	golgi, vacuole	85.21	75.93
TraesCS7D01G075900.1	Wheat	vacuole	82.64	74.49
TraesCS7D01G076000.1	Wheat	vacuole	78.78	71.85
TraesCS3D01G303900.1	Wheat	cytosol	72.35	70.31
HORVU5Hr1G078340.1	Barley	golgi, vacuole	53.38	68.03
TraesCS7D01G140500.1	Wheat	golgi, vacuole	71.06	64.06
TraesCS7D01G140000.1	Wheat	golgi, vacuole	71.38	63.79
EES07680	Sorghum	golgi, vacuole	70.74	63.58
EES05895	Sorghum	golgi, vacuole	70.42	63.29
EER90208	Sorghum	vacuole	70.42	63.29
OQU85880	Sorghum	golgi, vacuole	70.1	63.01
TraesCS7D01G139900.1	Wheat	vacuole	70.42	62.93
EES05427	Sorghum	vacuole	69.13	62.5
TraesCS7D01G140600.1	Wheat	endoplasmic reticulum, plasma membrane	59.16	59.93
Os07t0543600-00	Rice	golgi, vacuole	65.92	58.57
GSMUA_Achr3P06240_001	Banana	cytosol, mitochondrion, peroxisome, vacuole	45.66	45.81
TraesCS2D01G076000.1	Wheat	golgi, vacuole	50.48	45.77
TraesCS2D01G076200.1	Wheat	vacuole	50.48	45.77
TraesCS2D01G076400.1	Wheat	vacuole	50.16	45.48
TraesCS3D01G256900.1	Wheat	mitochondrion, plastid	51.45	44.82
TraesCS5D01G389100.1	Wheat	plastid, vacuole	51.13	44.79
TraesCS2D01G076300.1	Wheat	vacuole	48.87	43.93
TraesCS5D01G202700.1	Wheat	vacuole	48.55	43.64
TraesCS5D01G202800.1	Wheat	golgi, vacuole	50.8	43.41
GSMUA_Achr5P05340_001	Banana	vacuole	48.55	42.06
TraesCS7D01G076300.1	Wheat	vacuole	48.23	41.55
VIT_10s0042g00010.t01	Wine grape	vacuole	39.87	39.37
VIT_13s0074g00070.t01	Wine grape	vacuole	34.41	39.05
VIT_13s0074g00080.t01	Wine grape	vacuole	39.55	38.2
VIT_00s0575g00010.t01	Wine grape	vacuole	38.26	38.14
VIT_10s0042g00020.t01	Wine grape	vacuole	39.23	37.89
VIT_10s0042g00030.t01	Wine grape	vacuole	33.12	37.73
VIT_10s0042g00050.t01	Wine grape	vacuole	38.91	37.58
VIT_00s0575g00020.t01	Wine grape	vacuole	38.59	37.27
VIT_10s0071g00010.t01	Wine grape	vacuole	38.59	37.27
VIT_10s0071g00020.t01	Wine grape	vacuole	36.98	37.22
PGSC0003DMT400056839	Potato	vacuole	35.05	34.94
Bra008125.1-P	Field mustard	cytosol, peroxisome, vacuole	26.37	34.89
KRH07462	Soybean	vacuole	38.26	34.29
VIT_10s0071g00250.t01	Wine grape	vacuole	36.66	33.53
VIT_17s0000g04580.t01	Wine grape	extracellular, vacuole	19.29	33.15
KRH45407	Soybean	nucleus	36.98	32.95
CDX96505	Canola	vacuole	34.73	32.93
Solyc03g114560.2.1	Tomato	extracellular	34.41	32.72
Solyc12g039070.1.1	Tomato	nucleus	34.73	32.43
CDX73037	Canola	vacuole	34.08	32.32
Bra003820.1-P	Field mustard	vacuole	33.44	32.2
PGSC0003DMT400001736	Potato	cytosol, peroxisome, vacuole	28.62	32.13
VIT_17s0000g04600.t01	Wine grape	vacuole	35.37	32.07
Bra008127.1-P	Field mustard	vacuole	33.76	32.01
AT1G74010.1	Thale cress	vacuole	33.44	32.0
PGSC0003DMT400063277	Potato	vacuole	34.08	31.93
CDY45861	Canola	vacuole	33.76	31.82
PGSC0003DMT400063282	Potato	extracellular, vacuole	15.76	31.61
TraesCS5D01G139700.1	Wheat	vacuole	37.3	31.1
CDX96506	Canola	vacuole	32.48	31.08
AT1G74020.1	Thale cress	vacuole	33.44	31.04
Solyc03g114530.2.1	Tomato	vacuole	33.12	31.02
Solyc03g114550.1.1	Tomato	vacuole	27.33	31.02
AT1G74000.1	Thale cress	vacuole	32.8	31.0
KRH56734	Soybean	vacuole	34.08	30.99
Solyc03g114540.1.1	Tomato	vacuole	33.44	30.95
PGSC0003DMT400063274	Potato	vacuole	33.44	30.95
PGSC0003DMT400063286	Potato	vacuole	33.12	30.84
KRH03206	Soybean	vacuole	33.12	30.65
CDY66189	Canola	vacuole	29.26	30.64
CDY47728	Canola	vacuole	32.15	30.58
Bra008126.1-P	Field mustard	vacuole	32.15	30.58
CDX68204	Canola	vacuole	32.15	30.49
CDX73038	Canola	vacuole	31.83	30.46
CDY47729	Canola	vacuole	31.83	30.46
KRH54773	Soybean	vacuole	32.8	30.27
CDY66188	Canola	vacuole	31.83	30.18
Bra008124.1-P	Field mustard	vacuole	31.51	30.15
TraesCS5D01G400000.1	Wheat	golgi	38.59	30.15
CDY45863	Canola	vacuole	31.19	29.85
Bra015943.1-P	Field mustard	vacuole	31.19	29.75
CDX96507	Canola	vacuole	31.19	29.75
CDX73039	Canola	vacuole	31.19	29.75
VIT_17s0000g04610.t01	Wine grape	vacuole	33.76	28.61
KRH63133	Soybean	peroxisome, vacuole	15.43	27.75
TraesCS4D01G215800.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	36.01	27.12
VIT_17s0000g04590.t01	Wine grape	endoplasmic reticulum, peroxisome, vacuole	36.98	25.39
TraesCS1D01G207200.2	Wheat	extracellular, golgi, vacuole	28.3	23.98
TraesCS2D01G177900.2	Wheat	golgi	26.05	22.19
TraesCS2D01G177700.1	Wheat	plasma membrane, vacuole	25.72	21.8
Bra015944.1-P	Field mustard	vacuole	31.83	16.58

Protein Annotations

EnsemblPlants:TraesCS3D01G503900.1	EnsemblPlantsGene:TraesCS3D01G503900	Gene3D:2.120.10.30	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016844	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	InterPro:Strictosidine_synth_cons-reg
InterPro:Strictosidine_synthase	PANTHER:PTHR10426	PANTHER:PTHR10426:SF28	PFAM:PF03088	SUPFAM:SSF63829	MapMan:50.4.3

Description

No Description!

Coordinates

chr3D:+:591624629..591625564

Molecular Weight (calculated)

34205.5 Da

IEP (calculated)

9.606

GRAVY (calculated)

-0.664

Length

311 amino acids

Sequence
(BLAST)

001: MPHEGNSCRC REGRSKGRRA SDGQGHGPYS GVSDGRILKW NGDKLGWTTY AYGPGYDSKT CTPSKFSSET EAARESRCGR PLGLRFNQKS GDLYVADAYK
101: GLMRVAPGGG EATVLVNQVD GFPLRFTNGV DVDQVTGQVY FTDSSMNYQR SQHEMVTRTG DSTGRLMRYD PRTSDVTVLQ AGMTYPNGVA LSADRTHLVV
201: ASTGPCKLLR HWIKGVNAGT SEPFADLPGY PDNVRPDTKG GYWVALHREK NELPFGHDGH RLAVRVGNDG KIVEEMRGPK KVRPTEIMER INGKIYLGSV
301: ELPYVGVVKR K

Best Arabidopsis Sequence Match ( AT1G08470.1 )
(BLAST)

001: MAMSILAKIF LVFAIYCAID PFSHSSISKF PDFKTYKIDM PPLSSLPKER DRQNLLQNSE IRFLNEVQGP ESIAFDPQGR GPYTGVADGR ILFWNGTRWT
101: DFAYTSNNRS ELCDPKPSLL DYLKDEDICG RPLGLRFDKK NGDLYIADAY LGIMKVGPEG GLATSVTNEA DGVPLRFTND LDIDDEGNVY FTDSSSFFQR
201: RKFMLLIVSG EDSGRVLKYN PKTKETTTLV RNLQFPNGLS LGKDGSFFIF CEGSIGRLRK YWLKGEKAGT SEVVALLHGF PDNIRTNKDG DFWVAVHCHR
301: NIFTHLMAHY PRVRKFFLKL PISVKFQYLL QVGGWPHAVA VKYSEEGKVL KVLEDSKGKV VKAVSEVEEK DGKLWMGSVL MSFIAVYDLP

Arabidopsis Description

SSL3SSL3 [Source:UniProtKB/TrEMBL;Acc:A0A178WK70]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.