Factsheet for TraesCS4D01G215800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi, vacuole

Predictor Summary:

vacuole 1
mitochondrion 2
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G089000.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	99.52	99.52
TraesCS4B01G215300.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	98.79	98.79
HORVU4Hr1G061230.2	Barley	peroxisome, vacuole	96.85	93.46
Os03t0263600-01	Rice	cytosol, golgi, mitochondrion, vacuole	84.26	81.5
EER92507	Sorghum	cytosol, golgi, mitochondrion, vacuole	80.87	81.07
Zm00001d047858_P001	Maize	endoplasmic reticulum, golgi, mitochondrion, vacuole	80.15	80.34
VIT_05s0102g00880.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	63.92	65.02
KRH10120	Soybean	endoplasmic reticulum	63.92	64.39
Bra007457.1-P	Field mustard	golgi, vacuole	64.16	64.16
CDX71901	Canola	extracellular, golgi, vacuole	62.47	64.02
KRH23218	Soybean	golgi, vacuole	63.44	63.9
CDY05993	Canola	endoplasmic reticulum, golgi, vacuole	62.23	63.77
AT3G59530.3	Thale cress	golgi, vacuole	61.99	63.52
CDX89027	Canola	endoplasmic reticulum, vacuole	61.74	63.12
Bra014536.1-P	Field mustard	vacuole	63.2	63.04
PGSC0003DMT400030927	Potato	golgi, plasma membrane, vacuole	61.02	61.92
Solyc03g053130.2.1	Tomato	extracellular	61.26	61.11
GSMUA_Achr11P...	Banana	golgi, vacuole	53.27	57.29
TraesCS2D01G076200.1	Wheat	vacuole	33.9	40.82
TraesCS2D01G076000.1	Wheat	golgi, vacuole	33.66	40.52
TraesCS5D01G400000.1	Wheat	golgi	38.98	40.45
TraesCS3D01G256900.1	Wheat	mitochondrion, plastid	34.87	40.34
TraesCS2D01G076400.1	Wheat	vacuole	33.41	40.23
TraesCS2D01G076300.1	Wheat	vacuole	32.93	39.31
TraesCS5D01G389100.1	Wheat	plastid, vacuole	33.66	39.15
TraesCS5D01G202700.1	Wheat	vacuole	32.69	39.02
TraesCS3D01G303900.1	Wheat	cytosol	30.02	38.75
TraesCS7D01G140000.1	Wheat	golgi, vacuole	31.48	37.36
TraesCS7D01G139900.1	Wheat	vacuole	31.48	37.36
TraesCS7D01G140500.1	Wheat	golgi, vacuole	30.75	36.81
TraesCS7D01G076300.1	Wheat	vacuole	31.96	36.57
TraesCS5D01G202800.1	Wheat	golgi, vacuole	32.2	36.54
TraesCS3D01G503900.1	Wheat	nucleus	27.12	36.01
TraesCS7D01G076000.1	Wheat	vacuole	29.3	35.48
TraesCS5D01G139700.1	Wheat	vacuole	31.96	35.39
TraesCS3D01G504000.1	Wheat	vacuole	29.54	35.36
TraesCS7D01G075900.1	Wheat	vacuole	29.54	35.36
TraesCS7D01G140600.1	Wheat	endoplasmic reticulum, plasma membrane	26.15	35.18
TraesCS7D01G076600.1	Wheat	cytosol	16.71	33.01
TraesCS7D01G076500.1	Wheat	cytosol	14.53	31.58
TraesCS1D01G207200.2	Wheat	extracellular, golgi, vacuole	24.46	27.52
TraesCS2D01G177700.1	Wheat	plasma membrane, vacuole	23.97	26.98
TraesCS2D01G177900.2	Wheat	golgi	23.73	26.85

Protein Annotations

Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009555	GO:GO:0009653	GO:GO:0009987
GO:GO:0010584	GO:GO:0016043	GO:GO:0016844	InterPro:IPR011042	PFAM:PF03088	PANTHER:PTHR10426
PANTHER:PTHR10426:SF21	SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4D01G215800
EnsemblPlants:TraesCS4D01G215800.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:369668520..369669990

Molecular Weight (calculated)

46683.2 Da

IEP (calculated)

7.639

GRAVY (calculated)

-0.286

Length

413 amino acids

Sequence
(BLAST)

001: MEEKKPRRQG AAVRDGIVQY PHLFIAALAL ALVLMDPFHL GPLAGIDYRP VKHELAPYRE VMQRWPRDNG SRLRLGRLEF VNEVFGPESI EFDRQGRGPY
101: AGLADGRVVR WMGDKAGWET FAVMNPDWSE KVCANGVEST TKKQHGKEKW CGRPLGLRFH RETGELFIAD AYYGLMAVGE RGGVATSLAR EAGGDPVHFA
201: NDLDIHMNGS IFFTDTSTRY SRKDHLNILL EGEGTGRLLR YDRETGAVHV VLNGLVFPNG VQISQDQQFL LFSETTNCRI MRYWLEGPRA GQVEVFANLP
301: GFPDNVRLNS KGQFWVAIDC CRTPTQEVFA RWPWLRTAYF KIPVSMKTLG KMVSMKMYTL LALLDGEGNV VEVLEDRGGE VMKLVSEVRE VDRRLWIGTV
401: AHNHIATIPY PLD

Best Arabidopsis Sequence Match ( AT3G59530.1 )
(BLAST)

001: MEKKGQHGTY ESMMTHHPIL CIIALSVLFI AIDPFHMSPI GGREFKPVKH EVAPYKEVMG SWPRDNLSRL GNHGKLEFVD QVFGPESLEF DSLGRGPYTG
101: LADGRVVRWM GEAIGWETFS VVTSKWSEEA CVRGVDSTTN KQWKHEKLCG RPLGLRFHKE TGNLYIADAY YGLLVVGPEG GIATPLATHV EGKPILFAND
201: LDIHRNGSIF FTDTSKRYDR ANHFFILLEG ESTGRLLRYD PPTKTTHIVL EGLAFPNGIQ LSKDQSFLLF TETTNCRLVK YWLEGPKMGE VEVVADLPGF
301: PDNVRINEEG QFWVAIDCCR TPAQEVLTNN PWIRSIYFRL PIPMKLLAKT MGMRMYTVIS RFDEEGKVLE VLEDRQGKVM KLWIGTVAHN HIATLPYPLT
401: MNQ

Arabidopsis Description

SSL13Protein STRICTOSIDINE SYNTHASE-LIKE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1B4]
SUBAcon: [golgi,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.