Factsheet for VIT_05s0102g00880.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, extracellular

Predictor Summary:

cytosol 1
extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, golgi
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23218	Soybean	golgi, vacuole	79.56	78.78
KRH10120	Soybean	endoplasmic reticulum	79.31	78.54
AT3G59530.3	Thale cress	golgi, vacuole	74.63	75.19
Bra014536.1-P	Field mustard	vacuole	76.35	74.88
PGSC0003DMT400030927	Potato	golgi, plasma membrane, vacuole	74.88	74.69
CDX71901	Canola	extracellular, golgi, vacuole	73.89	74.44
CDX89027	Canola	endoplasmic reticulum, vacuole	73.89	74.26
CDY05993	Canola	endoplasmic reticulum, golgi, vacuole	73.65	74.19
Bra007457.1-P	Field mustard	golgi, vacuole	75.37	74.09
Solyc03g053130.2.1	Tomato	extracellular	74.88	73.43
TraesCS4B01G215300.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	65.52	64.41
TraesCS4D01G215800.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	65.02	63.92
TraesCS4A01G089000.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	65.02	63.92
EER92507	Sorghum	cytosol, golgi, mitochondrion, vacuole	63.3	62.38
HORVU4Hr1G061230.2	Barley	peroxisome, vacuole	65.52	62.15
Zm00001d047858_P001	Maize	endoplasmic reticulum, golgi, mitochondrion, vacuole	62.56	61.65
Os03t0263600-01	Rice	cytosol, golgi, mitochondrion, vacuole	64.29	61.12
GSMUA_Achr11P...	Banana	golgi, vacuole	54.68	57.81
VIT_06s0009g00850.t01	Wine grape	cytosol	41.38	47.86
VIT_13s0074g00070.t01	Wine grape	vacuole	29.06	43.07
VIT_08s0007g05370.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	38.67	42.43
VIT_10s0071g00020.t01	Wine grape	vacuole	31.53	41.42
VIT_10s0042g00010.t01	Wine grape	vacuole	32.02	41.27
VIT_13s0074g00080.t01	Wine grape	vacuole	32.51	40.99
VIT_00s0575g00010.t01	Wine grape	vacuole	31.28	40.71
VIT_00s0575g00020.t01	Wine grape	vacuole	32.27	40.68
VIT_10s0042g00050.t01	Wine grape	vacuole	32.27	40.68
VIT_10s0042g00030.t01	Wine grape	vacuole	27.34	40.66
VIT_10s0042g00020.t01	Wine grape	vacuole	32.02	40.37
VIT_10s0071g00250.t01	Wine grape	vacuole	33.5	40.0
VIT_10s0071g00010.t01	Wine grape	vacuole	31.53	39.75
VIT_17s0000g04580.t01	Wine grape	extracellular, vacuole	16.75	37.57
VIT_08s0007g05360.t01	Wine grape	vacuole	34.48	37.04
VIT_17s0000g04600.t01	Wine grape	vacuole	28.57	33.82
VIT_17s0000g04610.t01	Wine grape	vacuole	30.3	33.52
VIT_11s0016g00860.t01	Wine grape	golgi, vacuole	26.6	29.59
VIT_11s0016g00880.t01	Wine grape	plastid	26.35	29.08
VIT_04s0210g00060.t01	Wine grape	cytosol, mitochondrion	17.98	27.14
VIT_17s0000g04590.t01	Wine grape	endoplasmic reticulum, peroxisome, vacuole	29.8	26.71
VIT_04s0210g00130.t01	Wine grape	plasma membrane, vacuole	17.49	24.83
VIT_04s0210g00090.t01	Wine grape	mitochondrion, vacuole	11.33	23.47
VIT_04s0210g00120.t01	Wine grape	vacuole	21.43	22.96
VIT_04s0210g00080.t01	Wine grape	vacuole	21.18	22.69
VIT_11s0016g00870.t01	Wine grape	plasma membrane, vacuole	25.37	22.34
VIT_04s0210g00050.t01	Wine grape	plastid	22.66	22.06
VIT_04s0210g00100.t01	Wine grape	cytosol	8.87	20.57
VIT_04s0210g00040.t01	Wine grape	cytosol, peroxisome, vacuole	15.76	17.07
VIT_04s0210g00030.t01	Wine grape	vacuole	21.92	11.51

Protein Annotations

EntrezGene:100242221	wikigene:100242221	Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	ProteinID:CCB59864
ProteinID:CCB59864.1	UniProt:F6HYV0	EMBL:FN596500	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016788	GO:GO:0016844
InterPro:IPR011042	EntrezGene:LOC100242221	wikigene:LOC100242221	PFAM:PF03088	PANTHER:PTHR10426	PANTHER:PTHR10426:SF21
SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	TIGR:TC65479	TMHMM:TMhelix	UniParc:UPI000210A51A
ArrayExpress:VIT_05s0102g00880	EnsemblPlantsGene:VIT_05s0102g00880	EnsemblPlants:VIT_05s0102g00880.t01	unigene:Vvi.5538	RefSeq:XP_003632076	RefSeq:XP_003632076.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:22843173..22845239

Molecular Weight (calculated)

46064.1 Da

IEP (calculated)

7.624

GRAVY (calculated)

-0.137

Length

406 amino acids

Sequence
(BLAST)

001: MEKRSPLKDE ALLQHPCLLL VVLLLGFVVM DPFHMGPIGG HEFMPVKHDI APYKRVMEDW PRDNRSRLGQ GKLEFVDEVF GPESLEFDIF GRGPYTGLAD
101: GRIVRWMGDS VGWETFALVT PNWSEKLCAK GIDSTTSKQW KVEQRCGRPL GLRFHKETGD LYIADAYYGL LVVGPEGGLA TPLVTHVQGK PILFANDLDI
201: HKNGSIFFTD TSKRYNRMNH FFILLEGEAT GRLLRYDPPT RTTHLVLDGL AFPNGVQLSG DQSFLLFTET TNCRLMKYWL EGPKSGIVEL VANLPGFPDN
301: VRLNERGQFW VAIDCCRTPA QEVLTHNPWL KNIYFRLPVK LSMLARLMGM KMYTVISLFN EKGEILEVLE DRKGLVMRLV SEVREVKGKL WIGTVAHNHI
401: ATLSYP

Best Arabidopsis Sequence Match ( AT3G59530.1 )
(BLAST)

001: MEKKGQHGTY ESMMTHHPIL CIIALSVLFI AIDPFHMSPI GGREFKPVKH EVAPYKEVMG SWPRDNLSRL GNHGKLEFVD QVFGPESLEF DSLGRGPYTG
101: LADGRVVRWM GEAIGWETFS VVTSKWSEEA CVRGVDSTTN KQWKHEKLCG RPLGLRFHKE TGNLYIADAY YGLLVVGPEG GIATPLATHV EGKPILFAND
201: LDIHRNGSIF FTDTSKRYDR ANHFFILLEG ESTGRLLRYD PPTKTTHIVL EGLAFPNGIQ LSKDQSFLLF TETTNCRLVK YWLEGPKMGE VEVVADLPGF
301: PDNVRINEEG QFWVAIDCCR TPAQEVLTNN PWIRSIYFRL PIPMKLLAKT MGMRMYTVIS RFDEEGKVLE VLEDRQGKVM KLWIGTVAHN HIATLPYPLT
401: MNQ

Arabidopsis Description

SSL13Protein STRICTOSIDINE SYNTHASE-LIKE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1B4]
SUBAcon: [golgi,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.