Factsheet for Zm00001d047858_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi, vacuole

Predictor Summary:

mitochondrion 3
vacuole 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92507	Sorghum	cytosol, golgi, mitochondrion, vacuole	92.72	92.72
TraesCS4A01G089000.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	80.83	80.63
TraesCS4D01G215800.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	80.34	80.15
TraesCS4B01G215300.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	80.34	80.15
Os03t0263600-01	Rice	cytosol, golgi, mitochondrion, vacuole	82.52	79.63
HORVU4Hr1G061230.2	Barley	peroxisome, vacuole	80.34	77.34
AT3G59530.3	Thale cress	golgi, vacuole	61.41	62.78
VIT_05s0102g00880.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	61.65	62.56
KRH10120	Soybean	endoplasmic reticulum	61.41	61.71
Bra007457.1-P	Field mustard	golgi, vacuole	61.65	61.5
CDX71901	Canola	extracellular, golgi, vacuole	59.95	61.29
KRH23218	Soybean	golgi, vacuole	60.92	61.22
PGSC0003DMT400030927	Potato	golgi, plasma membrane, vacuole	60.44	61.18
Bra014536.1-P	Field mustard	vacuole	61.16	60.87
CDY05993	Canola	endoplasmic reticulum, golgi, vacuole	59.22	60.55
CDX89027	Canola	endoplasmic reticulum, vacuole	59.22	60.4
Solyc03g053130.2.1	Tomato	extracellular	60.68	60.39
GSMUA_Achr11P...	Banana	golgi, vacuole	48.54	52.08
Zm00001d029115_P001	Maize	extracellular, vacuole	24.03	42.31
Zm00001d020308_P001	Maize	cytosol, plastid, vacuole	16.26	41.61
Zm00001d012363_P001	Maize	endoplasmic reticulum, extracellular	14.32	40.41
Zm00001d029117_P001	Maize	vacuole	33.01	40.24
Zm00001d012249_P001	Maize	vacuole	33.5	40.0
Zm00001d029111_P001	Maize	vacuole	32.77	39.94
Zm00001d029108_P001	Maize	vacuole	30.58	39.75
Zm00001d012252_P001	Maize	vacuole	33.25	39.71
Zm00001d012366_P001	Maize	vacuole	32.77	39.13
Zm00001d012368_P001	Maize	golgi, vacuole	32.77	39.13
Zm00001d012371_P001	Maize	golgi, vacuole	32.77	39.13
Zm00001d012377_P001	Maize	vacuole	32.77	39.13
Zm00001d012375_P001	Maize	vacuole	31.8	39.1
Zm00001d020306_P001	Maize	endoplasmic reticulum, vacuole	32.52	39.07
Zm00001d020307_P001	Maize	endoplasmic reticulum, vacuole	17.48	34.95
Zm00001d034032_P001	Maize	plasma membrane	39.81	30.43
Zm00001d052471_P001	Maize	vacuole	34.71	29.42
Zm00001d006853_P001	Maize	vacuole	24.27	27.25
Zm00001d012373_P001	Maize	vacuole	32.52	22.79

Protein Annotations

EntrezGene:103639328	Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	ProteinID:AAK52489.1	ProteinID:AQL07828.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009555	GO:GO:0009653	GO:GO:0009987	GO:GO:0010584	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016844	InterPro:IPR011042	PFAM:PF03088	PANTHER:PTHR10426
PANTHER:PTHR10426:SF21	UniProt:Q94KI9	SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	TMHMM:TMhelix
UniParc:UPI000009DA48	EnsemblPlantsGene:Zm00001d047858	EnsemblPlants:Zm00001d047858_P001	EnsemblPlants:Zm00001d047858_T001	SEG:seg	:

Description

Protein STRICTOSIDINE SYNTHASE-LIKE 13

Coordinates

chr9:+:143631572..143633228

Molecular Weight (calculated)

46539.5 Da

IEP (calculated)

6.384

GRAVY (calculated)

-0.299

Length

412 amino acids

Sequence
(BLAST)

001: MEKRNLQWRR GRDGIVQYPH LFFAALALAL LVADPFGLSP LAEVDYRPVK HELAPYGEVM GSWPRDNASR LRRGRLEFVG EVFGPESIEF DLQGRGPYAG
101: LADGRVVRWM GEEAGWETFA VMNPDWSEEV CANGVNSTTR KQHEKEEFCG RPLGLRFHGE TGELYVADAY YGLMVVGQSG GVASSVAREA DGDPIRFAND
201: LDVHRNGSVF FTDTSMRYSR KDHLNILLEG EGTGRLLRYD PETSGVHVVL KGLVFPNGVQ ISEDHQFLLF SETTNCRIMR YWLEGPRAGE VEVFANLPGF
301: PDNVRSNGRG QFWVAIDCCR TPAQEVFAKR PWLRTLYFKF PLSLKVLTWK AARRMHTVLA LLDGEGRVVE VLEDRGHEVM KLVSEVREVG RKLWIGTVAH
401: NHIATIPYPL ED

Best Arabidopsis Sequence Match ( AT3G59530.1 )
(BLAST)

001: MEKKGQHGTY ESMMTHHPIL CIIALSVLFI AIDPFHMSPI GGREFKPVKH EVAPYKEVMG SWPRDNLSRL GNHGKLEFVD QVFGPESLEF DSLGRGPYTG
101: LADGRVVRWM GEAIGWETFS VVTSKWSEEA CVRGVDSTTN KQWKHEKLCG RPLGLRFHKE TGNLYIADAY YGLLVVGPEG GIATPLATHV EGKPILFAND
201: LDIHRNGSIF FTDTSKRYDR ANHFFILLEG ESTGRLLRYD PPTKTTHIVL EGLAFPNGIQ LSKDQSFLLF TETTNCRLVK YWLEGPKMGE VEVVADLPGF
301: PDNVRINEEG QFWVAIDCCR TPAQEVLTNN PWIRSIYFRL PIPMKLLAKT MGMRMYTVIS RFDEEGKVLE VLEDRQGKVM KLWIGTVAHN HIATLPYPLT
401: MNQ

Arabidopsis Description

SSL13Protein STRICTOSIDINE SYNTHASE-LIKE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1B4]
SUBAcon: [golgi,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.