CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

cytosol 2
vacuole 4
extracellular 2
golgi 3
plasma membrane 2
endoplasmic reticulum 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	vacuole
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10120	Soybean	endoplasmic reticulum	97.32	97.32
VIT_05s0102g00880.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	78.78	79.56
CDX71901	Canola	extracellular, golgi, vacuole	73.17	74.44
Bra007457.1-P	Field mustard	golgi, vacuole	74.63	74.09
CDY05993	Canola	endoplasmic reticulum, golgi, vacuole	72.68	73.95
Bra014536.1-P	Field mustard	vacuole	74.63	73.91
AT3G59530.3	Thale cress	golgi, vacuole	72.44	73.7
CDX89027	Canola	endoplasmic reticulum, vacuole	72.2	73.27
PGSC0003DMT400030927	Potato	golgi, plasma membrane, vacuole	70.0	70.52
Solyc03g053130.2.1	Tomato	extracellular	70.24	69.57
TraesCS4B01G215300.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	64.15	63.68
TraesCS4D01G215800.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	63.9	63.44
TraesCS4A01G089000.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	63.9	63.44
HORVU4Hr1G061230.2	Barley	peroxisome, vacuole	64.63	61.92
Os03t0263600-01	Rice	cytosol, golgi, mitochondrion, vacuole	63.66	61.12
Zm00001d047858_P001	Maize	endoplasmic reticulum, golgi, mitochondrion, vacuole	61.22	60.92
EER92507	Sorghum	cytosol, golgi, mitochondrion, vacuole	61.22	60.92
GSMUA_Achr11P...	Banana	golgi, vacuole	52.44	55.99
KRG95135	Soybean	endoplasmic reticulum	40.49	44.74
KRH66809	Soybean	endoplasmic reticulum	39.51	43.67
KRH45407	Soybean	nucleus	33.66	39.54
KRH07462	Soybean	vacuole	33.17	39.19
KRH22599	Soybean	vacuole	36.34	38.7
KRH26734	Soybean	vacuole	33.9	38.08
KRH56180	Soybean	endoplasmic reticulum	40.49	37.64
KRH66810	Soybean	vacuole	31.46	33.77
KRH03206	Soybean	vacuole	26.59	32.44
KRH56734	Soybean	vacuole	26.83	32.16
KRH54773	Soybean	vacuole	26.34	32.05
KRH63133	Soybean	peroxisome, vacuole	11.95	28.32
KRH37504	Soybean	vacuole	21.95	25.14
KRH69688	Soybean	golgi, vacuole	22.2	24.8
KRH07935	Soybean	endoplasmic reticulum	22.68	24.6
KRH69689	Soybean	plastid	23.17	23.99
KRH37503	Soybean	vacuole	15.85	20.7

Protein Annotations

EntrezGene:100810076	Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	EMBL:ACUP02008458	ncoils:Coil
EnsemblPlantsGene:GLYMA_13G345100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016788	GO:GO:0016844	UniProt:I1M570	InterPro:IPR011042
EnsemblPlants:KRH23218	ProteinID:KRH23218	ProteinID:KRH23218.1	PFAM:PF03088	SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg
TMHMM:TMhelix	UniParc:UPI00023CEB44	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:43575141..43577633

Molecular Weight (calculated)

46533.4 Da

IEP (calculated)

7.726

GRAVY (calculated)

-0.213

Length

410 amino acids

Sequence
(BLAST)

001: MEKIKIKLLM KDETFLQHPF VLAVVLVLGL VMMDPFHLGP VSEHEFRPVK HSIAPYHQVM KNWPRDNMSR LALHGKSEFK NQVFGPESLE FDHMGRGPYT
101: GLADGRVVRW MGEQLGWETF AVVTSNWTEK LCFRGNDSTT AKQWKHEKTC GRPLGLRFDK VNGDLYIADA YYGLLVVGPN GGLATSLATH VEGKPILFAN
201: DLDIHKNGSI FFTDTSKRYN RVAHFFILLE GEATGRLLRY DPPTKTTHVV LDGLAFPNGV QFSKDHSFLL YTETTNCRLM KLWTEGPKSG SVELLADLPG
301: FPDNVRINEK GQFWVAIDCC RTPAQEVLSH NPWLRNIYFR LPIRMSLLAR AMGMKMYTVI SLLDDKGEVL EVLEDQKGEV MKLVSEVREE QGKLWIGTVA
401: HNHIATLSYP

Best Arabidopsis Sequence Match ( AT3G59530.1 )
(BLAST)

001: MEKKGQHGTY ESMMTHHPIL CIIALSVLFI AIDPFHMSPI GGREFKPVKH EVAPYKEVMG SWPRDNLSRL GNHGKLEFVD QVFGPESLEF DSLGRGPYTG
101: LADGRVVRWM GEAIGWETFS VVTSKWSEEA CVRGVDSTTN KQWKHEKLCG RPLGLRFHKE TGNLYIADAY YGLLVVGPEG GIATPLATHV EGKPILFAND
201: LDIHRNGSIF FTDTSKRYDR ANHFFILLEG ESTGRLLRYD PPTKTTHIVL EGLAFPNGIQ LSKDQSFLLF TETTNCRLVK YWLEGPKMGE VEVVADLPGF
301: PDNVRINEEG QFWVAIDCCR TPAQEVLTNN PWIRSIYFRL PIPMKLLAKT MGMRMYTVIS RFDEEGKVLE VLEDRQGKVM KLWIGTVAHN HIATLPYPLT
401: MNQ

Arabidopsis Description

SSL13Protein STRICTOSIDINE SYNTHASE-LIKE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1B4]
SUBAcon: [extracellular,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.