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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:
  • plastid 1
  • mitochondrion 1
  • vacuole 3
  • extracellular 2
  • endoplasmic reticulum 3
  • plasma membrane 2
  • golgi 3
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, golgi, vacuole
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:vacuole
PProwler:secretory
TargetP:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX71901 Canola extracellular, golgi, vacuole 96.03 96.03
Bra007457.1-P Field mustard golgi, vacuole 97.02 94.67
CDX89027 Canola endoplasmic reticulum, vacuole 92.56 92.33
AT3G59530.3 Thale cress golgi, vacuole 89.33 89.33
VIT_05s0102g00880.t01 Wine grape endoplasmic reticulum, extracellular, golgi 74.19 73.65
KRH10120 Soybean endoplasmic reticulum 74.44 73.17
KRH23218 Soybean golgi, vacuole 73.95 72.68
PGSC0003DMT400030927 Potato golgi, plasma membrane, vacuole 69.48 68.8
Solyc03g053130.2.1 Tomato extracellular 69.73 67.87
TraesCS4B01G215300.1 Wheat endoplasmic reticulum, golgi, mitochondrion, vacuole 64.02 62.47
TraesCS4D01G215800.1 Wheat endoplasmic reticulum, golgi, mitochondrion, vacuole 63.77 62.23
TraesCS4A01G089000.1 Wheat endoplasmic reticulum, golgi, mitochondrion, vacuole 63.77 62.23
HORVU4Hr1G061230.2 Barley peroxisome, vacuole 65.01 61.22
EER92507 Sorghum cytosol, golgi, mitochondrion, vacuole 61.54 60.19
Zm00001d047858_P001 Maize endoplasmic reticulum, golgi, mitochondrion, vacuole 60.55 59.22
Os03t0263600-01 Rice cytosol, golgi, mitochondrion, vacuole 62.53 59.02
GSMUA_Achr11P... Banana golgi, vacuole 52.85 55.47
CDX92388 Canola vacuole 39.7 43.72
CDX95058 Canola vacuole 39.95 43.05
CDX93560 Canola vacuole 41.44 42.49
CDY16615 Canola endoplasmic reticulum, extracellular, vacuole 40.69 41.52
CDX72079 Canola vacuole 33.75 41.21
CDY70367 Canola cytosol 27.05 39.78
CDY06143 Canola vacuole 35.73 37.5
CDY23857 Canola vacuole 33.25 36.31
CDY22517 Canola vacuole 33.25 36.31
CDX79943 Canola vacuole 33.0 36.04
CDY22515 Canola vacuole 30.02 34.67
CDY35420 Canola vacuole 30.02 34.57
CDX76030 Canola endoplasmic reticulum, golgi, vacuole 31.51 33.78
CDX76033 Canola vacuole 31.27 33.51
CDY47397 Canola vacuole 24.07 33.22
CDY30963 Canola vacuole 30.77 32.98
CDY30558 Canola vacuole 30.52 32.98
CDX77108 Canola vacuole 30.27 32.97
CDY23858 Canola vacuole 30.52 32.89
CDY30962 Canola vacuole 30.52 32.71
CDX72080 Canola endoplasmic reticulum, extracellular, golgi 29.78 32.52
CDY30959 Canola extracellular, golgi, vacuole 29.78 32.43
CDX79944 Canola vacuole 30.02 32.27
CDY06144 Canola vacuole 29.53 32.25
CDY54042 Canola vacuole 29.53 32.16
CDX67673 Canola vacuole 29.03 31.62
CDY39351 Canola extracellular, plasma membrane, vacuole 27.3 31.52
CDX96505 Canola vacuole 22.83 28.05
CDX73037 Canola vacuole 22.83 28.05
CDY47728 Canola vacuole 22.58 27.83
CDY45861 Canola vacuole 22.58 27.58
CDX96506 Canola vacuole 22.08 27.38
CDX73038 Canola vacuole 21.84 27.08
CDY47729 Canola vacuole 21.84 27.08
CDX96507 Canola vacuole 21.84 26.99
CDX73039 Canola vacuole 21.59 26.69
CDY45863 Canola vacuole 21.34 26.46
CDX73720 Canola golgi, vacuole 24.07 26.08
CDY33279 Canola golgi, vacuole 23.82 25.88
CDY66188 Canola vacuole 20.35 25.0
CDX68204 Canola vacuole 20.35 25.0
CDY16307 Canola golgi, vacuole 22.83 24.86
CDY33280 Canola golgi, vacuole 22.33 24.32
CDY66189 Canola vacuole 17.87 24.24
CDY16306 Canola golgi, vacuole 21.09 23.81
CDX78005 Canola vacuole 22.58 21.98
Protein Annotations
Gene3D:2.120.10.30MapMan:50.4.3InterPro:6-blade_b-propeller_TolB-likeGO:A0A078F2H3EnsemblPlants:CDY05993ProteinID:CDY05993
ProteinID:CDY05993.1GO:GO:0003674GO:GO:0003824GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0016844EnsemblPlantsGene:GSBRNA2T00121835001InterPro:IPR011042PFAM:PF03088PANTHER:PTHR10426PANTHER:PTHR10426:SF21
SUPFAM:SSF63829InterPro:Strictosidine_synth_cons-regInterPro:Strictosidine_synthaseTMHMM:TMhelixUniParc:UPI0004EEDA52SEG:seg
Description
BnaA09g37870D
Coordinates
chrLK031967:-:143258..144753
Molecular Weight (calculated)
45306.7 Da
IEP (calculated)
6.840
GRAVY (calculated)
-0.172
Length
403 amino acids
Sequence
(BLAST)
001: MEKKGQNGTH DSLLTHYPVL CIIALSIIFI AIDPFHISPV GGREFKPVKH EVAPYKQVMD NWPRDNLSQL GHHGKLEFVD QVFGPESLEF DGLGRGPYTG
101: LADGRVVRWM GEAIGWETFS VVTSKWSEKI CARGVDSTTN KQWKHEKLCG RPLGLRFDKE SGNLFIADAY YGLLVVGPEG GVATPLATHV EGKPILFAND
201: LDIHRNGSIF FTDTSKRYDR ANHFFILLEG ESTGRLLRYD PPTKETHIVL DGLAFPNGIQ LSKDQSFLLF TETTNCRLVK YWLEGSKTGE VEVVADLPGF
301: PDNVRMNEKG EFWVAIDCCR TPVQEVLANN PWIKSIYFRL PIPMKLLATA MGMKMYTVIS RFNEDGKVLE VLEDRQGKVM KLLWIGTVAH NHIATLPYPL
401: AVN
Best Arabidopsis Sequence Match ( AT3G59530.1 )
(BLAST)
001: MEKKGQHGTY ESMMTHHPIL CIIALSVLFI AIDPFHMSPI GGREFKPVKH EVAPYKEVMG SWPRDNLSRL GNHGKLEFVD QVFGPESLEF DSLGRGPYTG
101: LADGRVVRWM GEAIGWETFS VVTSKWSEEA CVRGVDSTTN KQWKHEKLCG RPLGLRFHKE TGNLYIADAY YGLLVVGPEG GIATPLATHV EGKPILFAND
201: LDIHRNGSIF FTDTSKRYDR ANHFFILLEG ESTGRLLRYD PPTKTTHIVL EGLAFPNGIQ LSKDQSFLLF TETTNCRLVK YWLEGPKMGE VEVVADLPGF
301: PDNVRINEEG QFWVAIDCCR TPAQEVLTNN PWIRSIYFRL PIPMKLLAKT MGMRMYTVIS RFDEEGKVLE VLEDRQGKVM KLWIGTVAHN HIATLPYPLT
401: MNQ
Arabidopsis Description
SSL13Protein STRICTOSIDINE SYNTHASE-LIKE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1B4]
SUBAcon: [golgi,extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.