Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 5
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57010.1 | CDX97739 | AT3G16310.1 | 21798944 |
| AT3G57010.1 | CDY30157 | AT3G16310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30962 | Canola | vacuole | 90.41 | 70.21 |
| CDX76030 | Canola | endoplasmic reticulum, golgi, vacuole | 90.41 | 70.21 |
| CDX76033 | Canola | vacuole | 89.73 | 69.68 |
| CDY30963 | Canola | vacuole | 88.7 | 68.88 |
| AT3G57010.1 | Thale cress | extracellular, golgi, vacuole | 72.95 | 56.65 |
| CDY22517 | Canola | vacuole | 64.04 | 50.68 |
| CDY23857 | Canola | vacuole | 63.36 | 50.14 |
| CDX79943 | Canola | vacuole | 63.36 | 50.14 |
| CDX77108 | Canola | vacuole | 59.93 | 47.3 |
| CDY30558 | Canola | vacuole | 60.27 | 47.19 |
| CDY06144 | Canola | vacuole | 59.59 | 47.15 |
| CDX67673 | Canola | vacuole | 59.59 | 47.03 |
| CDY54042 | Canola | vacuole | 59.59 | 47.03 |
| CDX72080 | Canola | endoplasmic reticulum, extracellular, golgi | 59.25 | 46.88 |
| CDY30959 | Canola | extracellular, golgi, vacuole | 59.25 | 46.76 |
| CDY70367 | Canola | cytosol | 43.49 | 46.35 |
| CDY39351 | Canola | extracellular, plasma membrane, vacuole | 53.08 | 44.41 |
| CDX72079 | Canola | vacuole | 36.99 | 32.73 |
| KRH66809 | Soybean | endoplasmic reticulum | 41.44 | 32.61 |
| KRG95135 | Soybean | endoplasmic reticulum | 41.44 | 32.61 |
| CDY06143 | Canola | vacuole | 40.75 | 30.99 |
| CDX95058 | Canola | vacuole | 37.67 | 29.41 |
| CDX93560 | Canola | vacuole | 39.38 | 29.26 |
| CDX92388 | Canola | vacuole | 35.96 | 28.69 |
| CDY22515 | Canola | vacuole | 34.25 | 28.65 |
| CDX73037 | Canola | vacuole | 31.85 | 28.35 |
| CDX96505 | Canola | vacuole | 31.16 | 27.74 |
| CDY35420 | Canola | vacuole | 33.22 | 27.71 |
| CDY16615 | Canola | endoplasmic reticulum, extracellular, vacuole | 36.64 | 27.09 |
| CDX79944 | Canola | vacuole | 33.9 | 26.4 |
| CDY45861 | Canola | vacuole | 29.79 | 26.36 |
| CDY47728 | Canola | vacuole | 29.45 | 26.3 |
| CDY23858 | Canola | vacuole | 33.22 | 25.94 |
| CDY47729 | Canola | vacuole | 28.08 | 25.23 |
| CDY45863 | Canola | vacuole | 28.08 | 25.23 |
| CDX68204 | Canola | vacuole | 28.08 | 25.0 |
| CDX96506 | Canola | vacuole | 27.74 | 24.92 |
| CDY66189 | Canola | vacuole | 25.34 | 24.92 |
| CDX73039 | Canola | vacuole | 27.74 | 24.85 |
| CDY66188 | Canola | vacuole | 27.74 | 24.7 |
| CDX73038 | Canola | vacuole | 27.4 | 24.62 |
| CDX96507 | Canola | vacuole | 27.4 | 24.54 |
| CDY05993 | Canola | endoplasmic reticulum, golgi, vacuole | 33.22 | 24.07 |
| CDX71901 | Canola | extracellular, golgi, vacuole | 33.22 | 24.07 |
| CDX89027 | Canola | endoplasmic reticulum, vacuole | 33.22 | 24.01 |
| CDX73720 | Canola | golgi, vacuole | 19.86 | 15.59 |
| CDY16307 | Canola | golgi, vacuole | 19.52 | 15.41 |
| CDY33279 | Canola | golgi, vacuole | 19.52 | 15.36 |
| CDY33280 | Canola | golgi, vacuole | 19.18 | 15.14 |
| CDY16306 | Canola | golgi, vacuole | 18.15 | 14.85 |
| CDX78005 | Canola | vacuole | 20.21 | 14.25 |
Protein Annotations
| Gene3D:2.120.10.30 | MapMan:50.4.3 | InterPro:6-blade_b-propeller_TolB-like | GO:A0A078IB55 | UniProt:A0A078IB55 | EnsemblPlants:CDY47397 |
| ProteinID:CDY47397 | ProteinID:CDY47397.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016844 | EnsemblPlantsGene:GSBRNA2T00087302001 |
| InterPro:IPR011042 | PFAM:PF03088 | PANTHER:PTHR10426 | PANTHER:PTHR10426:SF24 | SUPFAM:SSF63829 | InterPro:Strictosidine_synth_cons-reg |
| InterPro:Strictosidine_synthase | TMHMM:TMhelix | UniParc:UPI0004EF0EF2 | : | : | : |
Description
BnaC04g24660DBnaC04g24660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IB55]
Coordinates
chrLK032713:-:168212..171410
Molecular Weight (calculated)
32431.5 Da
IEP (calculated)
9.465
GRAVY (calculated)
-0.116
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MPISQRVLKQ VAAFPVVLAI VCYFFLPSIN APDLLKGTKN VLQVAKTIPL PGDGPESLEF DSQGEGPYVG VTDGRILKWR GEELGWVEFA HSSPHRDNCS
101: RHKVVPSCGR PLGLSFHKKT GDLYFCDGYF GVMKAGPEGG LAELTKRKTL STSISDKYHF EQVFYVYMSG EKTGRVIKYD MKKKEATVIM DKLHLPNGLA
201: LSKDGSFVLT CESGTNTIHR IWVKGPKAGT NEVFAKIPGP MDDIRRTPTG DFWVALHSKD SLFTRVFLSH SFVGKFFIKT LNLMVGNLIE LL
101: RHKVVPSCGR PLGLSFHKKT GDLYFCDGYF GVMKAGPEGG LAELTKRKTL STSISDKYHF EQVFYVYMSG EKTGRVIKYD MKKKEATVIM DKLHLPNGLA
201: LSKDGSFVLT CESGTNTIHR IWVKGPKAGT NEVFAKIPGP MDDIRRTPTG DFWVALHSKD SLFTRVFLSH SFVGKFFIKT LNLMVGNLIE LL
001: MESLLLIAYA FLYLFLLSHE AEYKINADQS ENSNVGRFGG NYGRLGRLSG SIHHWTGEYR GLEKRPNHSE DNPPSRGWTG EPGLDPRGEG PYVGVTDGRI
101: LKWSGEDLGW IEFAYSSPHR KNCSSHKVEP ACGRPLGLSF EKKSGDLYFC DGYLGVMKVG PKGGLAEKVV DEVEGQKVMF ANQMDIDEEE DAIYFNDSSD
201: TYHFGDVFYA FLCGEKTGRA IRYDKKTKEA KVIMDRLHFP NGLALSIDGS FVLSCEVPTQ LVHRYWAKGP NAGTRDIFAK LPGYADNIRR TETGDFWVAL
301: HSKKTPFSRL SMIHPWVGKF FIKTLKMELL VFLFEGGKPH AVAVKLSGKT GEIMEILEDS EGKNMKFISE VQERDGRLWF GSVFLPSVWV LDRQ
101: LKWSGEDLGW IEFAYSSPHR KNCSSHKVEP ACGRPLGLSF EKKSGDLYFC DGYLGVMKVG PKGGLAEKVV DEVEGQKVMF ANQMDIDEEE DAIYFNDSSD
201: TYHFGDVFYA FLCGEKTGRA IRYDKKTKEA KVIMDRLHFP NGLALSIDGS FVLSCEVPTQ LVHRYWAKGP NAGTRDIFAK LPGYADNIRR TETGDFWVAL
301: HSKKTPFSRL SMIHPWVGKF FIKTLKMELL VFLFEGGKPH AVAVKLSGKT GEIMEILEDS EGKNMKFISE VQERDGRLWF GSVFLPSVWV LDRQ
Arabidopsis Description
SSL1Protein STRICTOSIDINE SYNTHASE-LIKE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4IJZ6]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.