CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, extracellular

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, golgi
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007293.1-P	Field mustard	vacuole	96.48	96.48
CDY06144	Canola	vacuole	96.48	96.48
CDY30959	Canola	extracellular, golgi, vacuole	86.72	86.49
CDX67673	Canola	vacuole	84.82	84.59
CDY54042	Canola	vacuole	84.82	84.59
CDX77108	Canola	vacuole	84.28	84.05
CDY30558	Canola	vacuole	84.28	83.38
CDY39351	Canola	extracellular, plasma membrane, vacuole	78.05	82.52
AT3G57020.1	Thale cress	vacuole	80.22	80.0
CDX76033	Canola	vacuole	65.58	64.36
CDX76030	Canola	endoplasmic reticulum, golgi, vacuole	65.31	64.1
CDY30962	Canola	vacuole	65.31	64.1
CDY30963	Canola	vacuole	65.04	63.83
CDX79943	Canola	vacuole	63.69	63.69
CDY23857	Canola	vacuole	63.41	63.41
CDY22517	Canola	vacuole	63.14	63.14
CDY70367	Canola	cytosol	46.61	62.77
CDY47397	Canola	vacuole	46.88	59.25
CDX72079	Canola	vacuole	39.57	44.24
CDY06143	Canola	vacuole	42.55	40.89
KRH66809	Soybean	endoplasmic reticulum	40.38	40.16
KRG95135	Soybean	endoplasmic reticulum	40.38	40.16
CDX95058	Canola	vacuole	39.3	38.77
CDX93560	Canola	vacuole	40.92	38.42
CDX92388	Canola	vacuole	37.4	37.7
CDY16615	Canola	endoplasmic reticulum, extracellular, vacuole	39.02	36.46
CDY22515	Canola	vacuole	33.06	34.96
CDY35420	Canola	vacuole	32.25	34.0
CDY47728	Canola	vacuole	29.27	33.03
CDX73037	Canola	vacuole	29.27	32.93
CDY23858	Canola	vacuole	33.33	32.89
CDX79944	Canola	vacuole	33.33	32.8
CDX96505	Canola	vacuole	28.18	31.71
CDY45861	Canola	vacuole	27.64	30.91
CDX96507	Canola	vacuole	26.83	30.37
CDX73039	Canola	vacuole	26.83	30.37
CDX89027	Canola	endoplasmic reticulum, vacuole	33.06	30.2
CDX71901	Canola	extracellular, golgi, vacuole	32.79	30.02
CDY05993	Canola	endoplasmic reticulum, golgi, vacuole	32.52	29.78
CDY66189	Canola	vacuole	23.58	29.29
CDX68204	Canola	vacuole	25.75	28.96
CDY45863	Canola	vacuole	25.47	28.92
CDY47729	Canola	vacuole	25.47	28.92
CDX96506	Canola	vacuole	25.2	28.62
CDX73038	Canola	vacuole	24.93	28.31
CDY66188	Canola	vacuole	24.93	28.05
CDX73720	Canola	golgi, vacuole	22.22	22.04
CDY33279	Canola	golgi, vacuole	21.95	21.83
CDY16307	Canola	golgi, vacuole	21.41	21.35
CDY16306	Canola	golgi, vacuole	20.6	21.29
CDY33280	Canola	golgi, vacuole	21.14	21.08
CDX78005	Canola	vacuole	21.95	19.57

Protein Annotations

Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	GO:A0A078C5G5	EnsemblPlants:CDX72080	ProteinID:CDX72080
ProteinID:CDX72080.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0016844	EnsemblPlantsGene:GSBRNA2T00155879001	InterPro:IPR011042	PFAM:PF03088	PANTHER:PTHR10426	PANTHER:PTHR10426:SF24
SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	TMHMM:TMhelix	UniParc:UPI0004EC09C2	SEG:seg

Description

BnaC08g27940D

Coordinates

chrLK031795:+:2250971..2253035

Molecular Weight (calculated)

41436.0 Da

IEP (calculated)

6.939

GRAVY (calculated)

-0.224

Length

369 amino acids

Sequence
(BLAST)

001: MPTSQKAPAW AIAAVLAVFA VIAYQILFAP DDLKGTKNIL PMAKTIPLPV DGPESIEWDP QGEGPYAAVV DGRILKWRGH DLGWVEFAYT SPLRGNCSRH
101: EVVPTCGRPL GLSFEKKTGD LYICDGYLGV MKVGPEGGLA ELVVDHAEGR KVMFANQMDI DEEEDVLYFN DSSDKYHFRE VFYVIFNGER SGRVIRFNKM
201: TKEAKVVMDN LRCNNGLALN KDRSFLITCE SATGLVHRYW IKGPKAGTRD IFSKVPGYPD NIRLTPTGDF WLGIHCKKNL IGRLMLNNKW LGKLVEKTVP
301: LNFLIGEMHG FRQQGIAVKI SGETGEVLEI LEDKEGKHMQ YVSEAYERDD GKLWFGSVFS PAVWVLDRK

Best Arabidopsis Sequence Match ( AT2G41300.1 )
(BLAST)

001: MESLLLIAYA FLYLFLLSHE AEYKINADQS ENSNVGRFGG NYGRLGRLSG SIHHWTGEYR GLEKRPNHSE DNPPSRGWTG EPGLDPRGEG PYVGVTDGRI
101: LKWSGEDLGW IEFAYSSPHR KNCSSHKVEP ACGRPLGLSF EKKSGDLYFC DGYLGVMKVG PKGGLAEKVV DEVEGQKVMF ANQMDIDEEE DAIYFNDSSD
201: TYHFGDVFYA FLCGEKTGRA IRYDKKTKEA KVIMDRLHFP NGLALSIDGS FVLSCEVPTQ LVHRYWAKGP NAGTRDIFAK LPGYADNIRR TETGDFWVAL
301: HSKKTPFSRL SMIHPWVGKF FIKTLKMELL VFLFEGGKPH AVAVKLSGKT GEIMEILEDS EGKNMKFISE VQERDGRLWF GSVFLPSVWV LDRQ

Arabidopsis Description

SSL1Protein STRICTOSIDINE SYNTHASE-LIKE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4IJZ6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.