CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79944	Canola	vacuole	97.59	97.33
CDY35420	Canola	vacuole	77.27	82.57
CDY22515	Canola	vacuole	77.01	82.52
VIT_08s0007g05360.t01	Wine grape	vacuole	50.27	49.74
KRH66810	Soybean	vacuole	47.86	46.86
CDX72079	Canola	vacuole	38.5	43.64
CDY06143	Canola	vacuole	42.25	41.15
HORVU5Hr1G043200.4	Barley	vacuole	40.91	40.91
PGSC0003DMT400048627	Potato	cytosol, golgi, mitochondrion, vacuole	37.17	40.76
TraesCS5D01G139700.1	Wheat	vacuole	40.64	40.75
TraesCS5B01G133600.1	Wheat	extracellular, vacuole	40.11	40.11
EES07950	Sorghum	vacuole	41.44	39.54
TraesCS5A01G131200.1	Wheat	vacuole	26.74	39.53
KXG27696	Sorghum	vacuole	41.18	39.49
CDX92388	Canola	vacuole	37.17	37.98
CDY16615	Canola	endoplasmic reticulum, extracellular, vacuole	39.57	37.47
CDY70367	Canola	cytosol	27.01	36.86
CDX93560	Canola	vacuole	38.24	36.39
CDX95058	Canola	vacuole	36.36	36.36
Os12t0138800-01	Rice	golgi, mitochondrion, plasma membrane, vacuole	41.18	35.81
CDX73037	Canola	vacuole	30.48	34.76
CDX77108	Canola	vacuole	34.22	34.59
CDY30959	Canola	extracellular, golgi, vacuole	34.22	34.59
CDX76033	Canola	vacuole	34.76	34.57
CDY45861	Canola	vacuole	30.48	34.55
CDY22517	Canola	vacuole	33.96	34.42
CDX73039	Canola	vacuole	29.95	34.36
CDY30963	Canola	vacuole	34.49	34.31
CDY47728	Canola	vacuole	29.95	34.25
CDX96505	Canola	vacuole	29.95	34.15
CDY39351	Canola	extracellular, plasma membrane, vacuole	31.82	34.1
CDX96507	Canola	vacuole	29.68	34.05
CDY30558	Canola	vacuole	33.96	34.05
CDX76030	Canola	endoplasmic reticulum, golgi, vacuole	34.22	34.04
CDY30962	Canola	vacuole	34.22	34.04
CDY23857	Canola	vacuole	33.42	33.88
CDX79943	Canola	vacuole	33.42	33.88
CDX67673	Canola	vacuole	33.16	33.51
CDX72080	Canola	endoplasmic reticulum, extracellular, golgi	32.89	33.33
CDY54042	Canola	vacuole	32.89	33.24
CDX73038	Canola	vacuole	28.88	33.23
CDY47397	Canola	vacuole	25.94	33.22
CDX96506	Canola	vacuole	28.61	32.92
CDY06144	Canola	vacuole	32.35	32.79
CDY45863	Canola	vacuole	28.34	32.62
CDY47729	Canola	vacuole	28.34	32.62
CDY66188	Canola	vacuole	28.34	32.32
Zm00001d052471_P001	Maize	vacuole	41.18	31.69
CDX68204	Canola	vacuole	27.54	31.4
CDX89027	Canola	endoplasmic reticulum, vacuole	33.42	30.94
CDY66189	Canola	vacuole	24.33	30.64
CDY05993	Canola	endoplasmic reticulum, golgi, vacuole	32.89	30.52
CDX71901	Canola	extracellular, golgi, vacuole	32.35	30.02
Os11t0142400-01	Rice	extracellular	6.68	27.47
Os11t0142300-00	Rice	extracellular, plasma membrane	7.75	25.89
CDY33279	Canola	golgi, vacuole	24.33	24.53
CDX73720	Canola	golgi, vacuole	24.33	24.46
CDY16307	Canola	golgi, vacuole	24.06	24.32
CDY33280	Canola	golgi, vacuole	23.8	24.05
CDY16306	Canola	golgi, vacuole	22.46	23.53
CDX78005	Canola	vacuole	24.6	22.22

Protein Annotations

Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	GO:A0A078GGU0	UniProt:A0A078GGU0	EnsemblPlants:CDY23858
ProteinID:CDY23858	ProteinID:CDY23858.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0016844	EnsemblPlantsGene:GSBRNA2T00024284001	InterPro:IPR011042	PFAM:PF03088	PANTHER:PTHR10426
PANTHER:PTHR10426:SF29	SUPFAM:SSF63829	SignalP:SignalP-noTM	InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	UniParc:UPI0004EE8B2C
SEG:seg	:	:	:	:	:

Description

BnaC04g01790DBnaC04g01790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGU0]

Coordinates

chrLK032150:+:293107..300529

Molecular Weight (calculated)

41536.4 Da

IEP (calculated)

7.679

GRAVY (calculated)

-0.254

Length

374 amino acids

Sequence
(BLAST)

001: MKLFFVLAIS FALLLSLFDS SGESPKHGES MLTVHFPDFH LIPTTGALGP ESFAFDFYGD GPFTGLSDGR IVKWTANESR WMDFAVTTPT REGCEGPHEH
101: QRTEHECGRP LGLAFEKSTG DLYIADAYMG LLKVGREGGL ANQVSTRQLD KPLRFTNAVE IDPRTGVVYF TDSSSVYQRR NYIGAIMSGD RTGRLMKYDP
201: NTNQVTTLLS NLAFANGVVM SQNGDYLLVA ETATSRVLRY WLNDRSVSKS HEKYEIFAEG LPGFPDNIKR CPRGGFWVGL NTKHSKLTKF AMSNAWLGRA
301: ALGLPVDWMK VHSYWAKYKG NGMAVRLSEG SGVISEVFQG TIGNKWISIS EVEERDGTLW VGSVNTPYTG VYKI

Best Arabidopsis Sequence Match ( AT2G41290.1 )
(BLAST)

001: MMKLLLVVAT SVALIFSVTD LSGEGPKHGG ESMLTVQIPD FRLIPTTGAL GPESFVFDFF GDGPYTGLSD GRIVKWLANE SRWIDFAVTT SAREGCEGPH
101: EHQRTEHVCG RPLGLAFDKS TGDLYIADAY MGLLKVGPTG GVATQVLPRE LNEALRFTNS LDINPRTGVV YFTDSSSVYQ RRNYIGAMMS GDKTGRLMKY
201: DNTKQVTTLL SNLAFVNGVA LSQNGDYLLV VETAMCRILR YWLNETSVKS QSHDNYEIFA EGLPGFPDNI KRSPRGGFWV GLNTKHSKLT KFAMSNAWLG
301: RAALGLPVDW MKVHSVWARY NGNGMAVRLS EDSGVILEVF EGKNENKWIS ISEVEEKDGT LWVGSVNTPF AGMYKI

Arabidopsis Description

SSL2Protein STRICTOSIDINE SYNTHASE-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLG8]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.