CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX97739
CDY30157

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57010.1	CDX97739	AT3G16310.1	21798944
AT3G57010.1	CDY30157	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76033	Canola	vacuole	97.07	97.07
CDY30962	Canola	vacuole	94.68	94.68
CDX76030	Canola	endoplasmic reticulum, golgi, vacuole	94.41	94.41
CDY47397	Canola	vacuole	68.88	88.7
AT3G57010.1	Thale cress	extracellular, golgi, vacuole	79.26	79.26
CDY70367	Canola	cytosol	51.33	70.44
CDY22517	Canola	vacuole	67.55	68.83
CDX77108	Canola	vacuole	67.29	68.38
CDY30558	Canola	vacuole	67.02	67.56
CDY23857	Canola	vacuole	66.22	67.48
CDX79943	Canola	vacuole	66.22	67.48
CDY30959	Canola	extracellular, golgi, vacuole	65.69	66.76
CDY39351	Canola	extracellular, plasma membrane, vacuole	61.7	66.48
CDY54042	Canola	vacuole	64.63	65.68
CDY06144	Canola	vacuole	64.36	65.58
CDX67673	Canola	vacuole	64.1	65.14
CDX72080	Canola	endoplasmic reticulum, extracellular, golgi	63.83	65.04
CDX72079	Canola	vacuole	39.89	45.45
KRG95135	Soybean	endoplasmic reticulum	43.62	44.2
KRH66809	Soybean	endoplasmic reticulum	43.09	43.67
CDY06143	Canola	vacuole	43.09	42.19
CDX95058	Canola	vacuole	39.36	39.57
CDX93560	Canola	vacuole	41.22	39.44
CDX92388	Canola	vacuole	38.03	39.07
CDY16615	Canola	endoplasmic reticulum, extracellular, vacuole	40.69	38.73
CDY22515	Canola	vacuole	32.71	35.24
CDX79944	Canola	vacuole	35.11	35.2
CDX96505	Canola	vacuole	30.32	34.76
CDX73037	Canola	vacuole	30.32	34.76
CDY23858	Canola	vacuole	34.31	34.49
CDY35420	Canola	vacuole	31.91	34.29
CDY47728	Canola	vacuole	29.26	33.64
CDY45861	Canola	vacuole	28.99	33.03
CDY47729	Canola	vacuole	28.19	32.62
CDY66189	Canola	vacuole	25.53	32.32
CDX96506	Canola	vacuole	27.93	32.31
CDY45863	Canola	vacuole	27.93	32.31
CDX68204	Canola	vacuole	27.93	32.01
CDX73038	Canola	vacuole	27.66	32.0
CDY66188	Canola	vacuole	27.66	31.71
CDX73039	Canola	vacuole	27.39	31.6
CDX96507	Canola	vacuole	27.39	31.6
CDX89027	Canola	endoplasmic reticulum, vacuole	33.51	31.19
CDY05993	Canola	endoplasmic reticulum, golgi, vacuole	32.98	30.77
CDX71901	Canola	extracellular, golgi, vacuole	32.71	30.52
CDY33279	Canola	golgi, vacuole	20.48	20.75
CDY16306	Canola	golgi, vacuole	19.15	20.17
CDX73720	Canola	golgi, vacuole	19.95	20.16
CDY33280	Canola	golgi, vacuole	19.41	19.73
CDY16307	Canola	golgi, vacuole	19.15	19.46
CDX78005	Canola	vacuole	19.95	18.12

Protein Annotations

Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	GO:A0A078H280	UniProt:A0A078H280	EnsemblPlants:CDY30963
ProteinID:CDY30963	ProteinID:CDY30963.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016020	GO:GO:0016021	GO:GO:0016844	EnsemblPlantsGene:GSBRNA2T00046983001
InterPro:IPR011042	PFAM:PF03088	PANTHER:PTHR10426	PANTHER:PTHR10426:SF24	SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg
InterPro:Strictosidine_synthase	TMHMM:TMhelix	UniParc:UPI0004EC1FA4	:	:	:

Description

BnaC04g24610DBnaC04g24610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H280]

Coordinates

chrLK032265:-:39696..41376

Molecular Weight (calculated)

42129.7 Da

IEP (calculated)

6.907

GRAVY (calculated)

-0.182

Length

376 amino acids

Sequence
(BLAST)

001: MPISQRVLKQ VAAFPVVLAI VCYFLWPSII APDHLKGSKD ILQVAKTIPL PGDGPESLEF DSQGEGPYVG VTDGRILKWR GEKLGWVEFA YSSPHRDNCS
101: RHKVVPSCGR PLGLSFHKKT GDLYFCDGYF GVMKVGPEGG LAELVVDEAE GRKVMFANQM DIDQEEEVFY FNDSSDKYHF EQVFYVYMSG EKTGRVIRYD
201: MKKKEATVIM DKLHLPNGLA ISKDGSFVLT CESGTNTIHR IWVKGPKAGT NEVFAKIPGP MDNIRRTPTG DFWVALHSKD SLFTRVFVSH SLVGKFFIKT
301: LKVETVVHLI NGGKPHGIVV KLSGETGEIL EILEDSEGKT MKYVSEAYER EDGNLWFGSV YWPAVWVLDK SVYALK

Best Arabidopsis Sequence Match ( AT3G57010.1 )
(BLAST)

001: MPISRRVLTP ITAAPVILAV LCFFFWSSII GPDNLKGTKH VLQDAKTIPL PVDGPESLEF DPQGEGPYVG VTDGRILKWR GEELGWVDFA YTSPHRDNCS
101: SHEVVPSCGR PLGLSFERKT GDLYICDGYF GVMKVGPEGG LAELVVDEAE GRKVMFANQG DIDEEEDIFY FNDSSDTYHF RDVFYVSLSG TKVGRVIRYD
201: MKKKEAKVIM DKLRLPNGLA LSKNGSFVVT CESSTNICHR IWVKGPKSGT NEVFATLPGS PDNIRRTPTG DFWVALHCKK NLFTRAVLIH TWVGRFFMNT
301: MKMETVIHFM NGGKPHGIVV KLSGETGEIL EILEDSEGKT VKYVSEAYET KDGKLWIGSV YWPAVWVLDT SVYDSI

Arabidopsis Description

SSL8Protein STRICTOSIDINE SYNTHASE-LIKE 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J7]
SUBAcon: [golgi,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.