Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 5
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57010.1 | CDX97739 | AT3G16310.1 | 21798944 |
| AT3G57010.1 | CDY30157 | AT3G16310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30963 | Canola | vacuole | 97.07 | 97.07 |
| CDY30962 | Canola | vacuole | 95.21 | 95.21 |
| CDX76030 | Canola | endoplasmic reticulum, golgi, vacuole | 94.41 | 94.41 |
| CDY47397 | Canola | vacuole | 69.68 | 89.73 |
| AT3G57010.1 | Thale cress | extracellular, golgi, vacuole | 79.79 | 79.79 |
| CDY70367 | Canola | cytosol | 51.33 | 70.44 |
| CDX77108 | Canola | vacuole | 67.82 | 68.92 |
| CDY22517 | Canola | vacuole | 67.29 | 68.56 |
| CDY30558 | Canola | vacuole | 67.55 | 68.1 |
| CDY23857 | Canola | vacuole | 65.96 | 67.21 |
| CDX79943 | Canola | vacuole | 65.96 | 67.21 |
| CDY30959 | Canola | extracellular, golgi, vacuole | 65.96 | 67.03 |
| CDY39351 | Canola | extracellular, plasma membrane, vacuole | 61.7 | 66.48 |
| CDY54042 | Canola | vacuole | 65.16 | 66.22 |
| CDY06144 | Canola | vacuole | 64.89 | 66.12 |
| CDX67673 | Canola | vacuole | 64.63 | 65.68 |
| CDX72080 | Canola | endoplasmic reticulum, extracellular, golgi | 64.36 | 65.58 |
| CDX72079 | Canola | vacuole | 40.16 | 45.76 |
| KRG95135 | Soybean | endoplasmic reticulum | 44.15 | 44.74 |
| KRH66809 | Soybean | endoplasmic reticulum | 44.15 | 44.74 |
| CDY06143 | Canola | vacuole | 43.35 | 42.45 |
| CDX95058 | Canola | vacuole | 39.36 | 39.57 |
| CDX93560 | Canola | vacuole | 41.22 | 39.44 |
| CDX92388 | Canola | vacuole | 37.5 | 38.52 |
| CDY16615 | Canola | endoplasmic reticulum, extracellular, vacuole | 40.16 | 38.23 |
| CDY22515 | Canola | vacuole | 33.24 | 35.82 |
| CDX79944 | Canola | vacuole | 35.37 | 35.47 |
| CDY35420 | Canola | vacuole | 32.45 | 34.86 |
| CDY23858 | Canola | vacuole | 34.57 | 34.76 |
| CDX73037 | Canola | vacuole | 30.32 | 34.76 |
| CDX96505 | Canola | vacuole | 29.79 | 34.15 |
| CDY45861 | Canola | vacuole | 29.79 | 33.94 |
| CDY47728 | Canola | vacuole | 29.26 | 33.64 |
| CDY47729 | Canola | vacuole | 27.93 | 32.31 |
| CDX96506 | Canola | vacuole | 27.66 | 32.0 |
| CDY45863 | Canola | vacuole | 27.66 | 32.0 |
| CDY66189 | Canola | vacuole | 25.27 | 31.99 |
| CDX68204 | Canola | vacuole | 27.66 | 31.71 |
| CDX73038 | Canola | vacuole | 27.39 | 31.69 |
| CDX89027 | Canola | endoplasmic reticulum, vacuole | 34.04 | 31.68 |
| CDX96507 | Canola | vacuole | 27.39 | 31.6 |
| CDY66188 | Canola | vacuole | 27.39 | 31.4 |
| CDX73039 | Canola | vacuole | 27.13 | 31.29 |
| CDY05993 | Canola | endoplasmic reticulum, golgi, vacuole | 33.51 | 31.27 |
| CDX71901 | Canola | extracellular, golgi, vacuole | 33.24 | 31.02 |
| CDY33279 | Canola | golgi, vacuole | 19.95 | 20.22 |
| CDY16306 | Canola | golgi, vacuole | 18.88 | 19.89 |
| CDY33280 | Canola | golgi, vacuole | 19.41 | 19.73 |
| CDX73720 | Canola | golgi, vacuole | 19.41 | 19.62 |
| CDY16307 | Canola | golgi, vacuole | 19.15 | 19.46 |
| CDX78005 | Canola | vacuole | 19.68 | 17.87 |
Protein Annotations
| EnsemblPlants:CDX76033 | EnsemblPlantsGene:GSBRNA2T00126261001 | Gene3D:2.120.10.30 | GO:A0A078CLX3 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016844 | InterPro:6-blade_b-propeller_TolB-like | InterPro:IPR011042 |
| InterPro:Strictosidine_synth_cons-reg | InterPro:Strictosidine_synthase | PANTHER:PTHR10426 | PANTHER:PTHR10426:SF24 | PFAM:PF03088 | ProteinID:CDX76033 |
| ProteinID:CDX76033.1 | SUPFAM:SSF63829 | TMHMM:TMhelix | UniParc:UPI0004EF1179 | MapMan:50.4.3 | : |
Description
BnaA04g02970D
Coordinates
chrLK031806:-:316759..318581
Molecular Weight (calculated)
42056.4 Da
IEP (calculated)
6.513
GRAVY (calculated)
-0.218
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MPISQRVLKQ VAAFPVVLAI VCYFFWPSII APDHLKGSKD ILQAAKTIPL PGDGPESLEF DSQGEGPYVG VTDGRILKWR GEELGWVEFA HSSPHRDNCS
101: RHKVVPSCGR PLGLSFHKKT GDLYFCDGYF GVMKVGPEGG LAELVVDEAE GRKVMFANQM DIDQEEDVFY FNDSSDKYHF EQVFYVYMSG EKTGRVIRYD
201: MKKKEATVVM DKLHLPNGLA LSKDGSFVLT CESGTNTIHR IWVKGPKAGT NEVFAKIPGP MDNIRRTPTG DFWVALHSKD SLFTRVFLSH SLVGKFFIKT
301: LKVETVVHLI NGGKPHGIVV KLSGETGEIL ETLEDSEGKT MKYVSEAYER EDGNLWFGSV YWPAVWVLDN SVYGLK
101: RHKVVPSCGR PLGLSFHKKT GDLYFCDGYF GVMKVGPEGG LAELVVDEAE GRKVMFANQM DIDQEEDVFY FNDSSDKYHF EQVFYVYMSG EKTGRVIRYD
201: MKKKEATVVM DKLHLPNGLA LSKDGSFVLT CESGTNTIHR IWVKGPKAGT NEVFAKIPGP MDNIRRTPTG DFWVALHSKD SLFTRVFLSH SLVGKFFIKT
301: LKVETVVHLI NGGKPHGIVV KLSGETGEIL ETLEDSEGKT MKYVSEAYER EDGNLWFGSV YWPAVWVLDN SVYGLK
001: MPISRRVLTP ITAAPVILAV LCFFFWSSII GPDNLKGTKH VLQDAKTIPL PVDGPESLEF DPQGEGPYVG VTDGRILKWR GEELGWVDFA YTSPHRDNCS
101: SHEVVPSCGR PLGLSFERKT GDLYICDGYF GVMKVGPEGG LAELVVDEAE GRKVMFANQG DIDEEEDIFY FNDSSDTYHF RDVFYVSLSG TKVGRVIRYD
201: MKKKEAKVIM DKLRLPNGLA LSKNGSFVVT CESSTNICHR IWVKGPKSGT NEVFATLPGS PDNIRRTPTG DFWVALHCKK NLFTRAVLIH TWVGRFFMNT
301: MKMETVIHFM NGGKPHGIVV KLSGETGEIL EILEDSEGKT VKYVSEAYET KDGKLWIGSV YWPAVWVLDT SVYDSI
101: SHEVVPSCGR PLGLSFERKT GDLYICDGYF GVMKVGPEGG LAELVVDEAE GRKVMFANQG DIDEEEDIFY FNDSSDTYHF RDVFYVSLSG TKVGRVIRYD
201: MKKKEAKVIM DKLRLPNGLA LSKNGSFVVT CESSTNICHR IWVKGPKSGT NEVFATLPGS PDNIRRTPTG DFWVALHCKK NLFTRAVLIH TWVGRFFMNT
301: MKMETVIHFM NGGKPHGIVV KLSGETGEIL EILEDSEGKT VKYVSEAYET KDGKLWIGSV YWPAVWVLDT SVYDSI
Arabidopsis Description
SSL8Protein STRICTOSIDINE SYNTHASE-LIKE 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J7]
SUBAcon: [golgi,extracellular,vacuole]
SUBAcon: [golgi,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.