CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

cytosol 1
extracellular 4
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79943	Canola	vacuole	99.73	99.73
Bra004614.1-P	Field mustard	vacuole	99.46	99.46
CDY70367	Canola	cytosol	68.02	91.61
CDY22517	Canola	vacuole	90.51	90.51
AT2G41300.1	Thale cress	vacuole	78.05	73.1
CDX76030	Canola	endoplasmic reticulum, golgi, vacuole	67.75	66.49
CDY30963	Canola	vacuole	67.48	66.22
CDX76033	Canola	vacuole	67.21	65.96
CDY30959	Canola	extracellular, golgi, vacuole	65.85	65.68
CDY30962	Canola	vacuole	66.67	65.43
CDY54042	Canola	vacuole	64.5	64.32
CDX67673	Canola	vacuole	64.5	64.32
CDY30558	Canola	vacuole	64.5	63.81
CDX77108	Canola	vacuole	63.69	63.51
CDX72080	Canola	endoplasmic reticulum, extracellular, golgi	63.41	63.41
CDY47397	Canola	vacuole	50.14	63.36
CDY39351	Canola	extracellular, plasma membrane, vacuole	59.62	63.04
CDY06144	Canola	vacuole	62.87	62.87
CDX72079	Canola	vacuole	41.19	46.06
KRH66809	Soybean	endoplasmic reticulum	45.26	45.01
KRG95135	Soybean	endoplasmic reticulum	44.72	44.47
CDY06143	Canola	vacuole	45.26	43.49
CDX92388	Canola	vacuole	39.02	39.34
CDX95058	Canola	vacuole	39.57	39.04
CDY16615	Canola	endoplasmic reticulum, extracellular, vacuole	41.46	38.73
CDX93560	Canola	vacuole	40.65	38.17
CDX73037	Canola	vacuole	31.17	35.06
CDY22515	Canola	vacuole	32.79	34.67
CDX79944	Canola	vacuole	34.42	33.87
CDX96505	Canola	vacuole	30.08	33.84
CDY35420	Canola	vacuole	31.98	33.71
CDY47728	Canola	vacuole	29.81	33.64
CDY23858	Canola	vacuole	33.88	33.42
CDX89027	Canola	endoplasmic reticulum, vacuole	36.59	33.42
CDY45861	Canola	vacuole	29.81	33.33
CDY05993	Canola	endoplasmic reticulum, golgi, vacuole	36.31	33.25
CDX71901	Canola	extracellular, golgi, vacuole	36.31	33.25
CDX96506	Canola	vacuole	28.18	32.0
CDY66189	Canola	vacuole	25.75	31.99
CDX73039	Canola	vacuole	28.18	31.9
CDX96507	Canola	vacuole	28.18	31.9
CDX68204	Canola	vacuole	28.18	31.71
CDY66188	Canola	vacuole	27.91	31.4
CDX73038	Canola	vacuole	27.64	31.38
CDY47729	Canola	vacuole	27.37	31.08
CDY45863	Canola	vacuole	27.1	30.77
CDY16307	Canola	golgi, vacuole	22.76	22.7
CDY33279	Canola	golgi, vacuole	22.22	22.1
CDY33280	Canola	golgi, vacuole	21.95	21.89
CDY16306	Canola	golgi, vacuole	20.6	21.29
CDX73720	Canola	golgi, vacuole	20.87	20.7
CDX78005	Canola	vacuole	21.68	19.32

Protein Annotations

Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	GO:A0A078GFF0	UniProt:A0A078GFF0	EnsemblPlants:CDY23857
ProteinID:CDY23857	ProteinID:CDY23857.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016020	GO:GO:0016021	GO:GO:0016844	EnsemblPlantsGene:GSBRNA2T00024280001
InterPro:IPR011042	PFAM:PF03088	PANTHER:PTHR10426	PANTHER:PTHR10426:SF24	SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg
InterPro:Strictosidine_synthase	TMHMM:TMhelix	UniParc:UPI0004EE87C5	SEG:seg	:	:

Description

BnaC04g01800DBnaC04g01800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFF0]

Coordinates

chrLK032150:+:279002..281037

Molecular Weight (calculated)

41003.4 Da

IEP (calculated)

6.868

GRAVY (calculated)

-0.159

Length

369 amino acids

Sequence
(BLAST)

001: MPISRKFRTW AVVTAVIAVL VIFVGPSIIG PESIVGSKNV LTKATMIPLP VDGPESLDWD PQGEGPYVGV TDGSILKWRG ADLSWVKFAY STPDRGNCSR
101: HKVEPACGRP LGLSFEKKSG DLYFCDGYLG VMKVGPNGGL AEKVVDEVEG QKIMFANQMD IDEEDDAIYF NDSSDTYHFG DVFYAFLCGE KTGRAIRYDK
201: KTKEAKVIMD GLHFPNGLAI SKDGSFVLSC EVPTQLVHRY WVKGPKAGTR DIFAKLPGYA DNIRRTETGD FWVALHSKKT PFSRLSLMHP WIGKFFMKTL
301: NMDLLVFLFE GGKPHAGAVK LCGKTGEVME VLEDSEGKNM KFVSEVQERD GKLWFGSVFL PSVWVLDRQ

Best Arabidopsis Sequence Match ( AT2G41300.1 )
(BLAST)

001: MESLLLIAYA FLYLFLLSHE AEYKINADQS ENSNVGRFGG NYGRLGRLSG SIHHWTGEYR GLEKRPNHSE DNPPSRGWTG EPGLDPRGEG PYVGVTDGRI
101: LKWSGEDLGW IEFAYSSPHR KNCSSHKVEP ACGRPLGLSF EKKSGDLYFC DGYLGVMKVG PKGGLAEKVV DEVEGQKVMF ANQMDIDEEE DAIYFNDSSD
201: TYHFGDVFYA FLCGEKTGRA IRYDKKTKEA KVIMDRLHFP NGLALSIDGS FVLSCEVPTQ LVHRYWAKGP NAGTRDIFAK LPGYADNIRR TETGDFWVAL
301: HSKKTPFSRL SMIHPWVGKF FIKTLKMELL VFLFEGGKPH AVAVKLSGKT GEIMEILEDS EGKNMKFISE VQERDGRLWF GSVFLPSVWV LDRQ

Arabidopsis Description

SSL1Protein STRICTOSIDINE SYNTHASE-LIKE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4IJZ6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.