Factsheet for PGSC0003DMT400048627

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, vacuole, cytosol

Predictor Summary:

plastid 1
vacuole 2
mitochondrion 2
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g05360.t01	Wine grape	vacuole	47.21	42.59
Bra000222.1-P	Field mustard	cytosol	41.06	40.58
PGSC0003DMT400076777	Potato	vacuole	42.82	39.25
AT2G41290.1	Thale cress	vacuole	42.82	38.83
Bra004613.1-P	Field mustard	vacuole	41.35	37.6
CDX79944	Canola	vacuole	41.35	37.6
CDY23858	Canola	vacuole	40.76	37.17
KRH66810	Soybean	vacuole	41.35	36.91
PGSC0003DMT400044684	Potato	vacuole	37.83	36.86
CDY35420	Canola	vacuole	37.54	36.57
CDY22515	Canola	vacuole	37.24	36.39
PGSC0003DMT400007661	Potato	vacuole	40.18	36.15
PGSC0003DMT400056839	Potato	vacuole	32.26	35.26
PGSC0003DMT400044531	Potato	vacuole	37.83	34.58
HORVU5Hr1G043200.4	Barley	vacuole	36.66	33.42
TraesCS5B01G133600.1	Wheat	extracellular, vacuole	35.48	32.35
PGSC0003DMT400044685	Potato	extracellular	25.51	32.34
PGSC0003DMT400015199	Potato	vacuole	36.95	32.23
TraesCS5D01G139700.1	Wheat	vacuole	35.19	32.17
PGSC0003DMT400063274	Potato	vacuole	31.67	32.14
KXG27696	Sorghum	vacuole	36.66	32.05
EES07950	Sorghum	vacuole	36.07	31.38
TraesCS5A01G131200.1	Wheat	vacuole	23.17	31.23
PGSC0003DMT400007732	Potato	vacuole	35.78	31.2
PGSC0003DMT400063286	Potato	vacuole	30.5	31.14
PGSC0003DMT400063277	Potato	vacuole	29.91	30.72
PGSC0003DMT400030927	Potato	golgi, plasma membrane, vacuole	35.78	29.98
PGSC0003DMT400001736	Potato	cytosol, peroxisome, vacuole	24.05	29.6
Os12t0138800-01	Rice	golgi, mitochondrion, plasma membrane, vacuole	37.24	29.53
PGSC0003DMT400063282	Potato	extracellular, vacuole	12.9	28.39
Zm00001d052471_P001	Maize	vacuole	36.07	25.31
PGSC0003DMT400005990	Potato	cytosol	21.41	25.26
PGSC0003DMT400003995	Potato	golgi, vacuole	24.34	22.19
Os11t0142400-01	Rice	extracellular	1.47	5.49
Os11t0142300-00	Rice	extracellular, plasma membrane	1.47	4.46

Protein Annotations

EnsemblPlants:PGSC0003DMT400048627	EnsemblPlantsGene:PGSC0003DMG402018893	Gene3D:2.120.10.30	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016844	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	InterPro:Strictosidine_synth_cons-reg
InterPro:Strictosidine_synthase	PANTHER:PTHR10426	PANTHER:PTHR10426:SF29	PFAM:PF03088	PGSC:PGSC0003DMG402018893	SEG:seg
SUPFAM:SSF63829	UniParc:UPI000294D58F	UniProt:M1BMP4	MapMan:50.4.3	:	:

Description

Strictosidine synthase [Source:PGSC_GENE;Acc:PGSC0003DMG402018893]

Coordinates

chr00:-:1517822..1520632

Molecular Weight (calculated)

38060.2 Da

IEP (calculated)

9.798

GRAVY (calculated)

-0.141

Length

341 amino acids

Sequence
(BLAST)

001: MWVPNLTLTS IRATLAQKKL MKWDREDIPP VKLALLSLGS LPPVFVPLLD GCEGFHDHST SEHKCGRPLG LEFDENSGDL FIADAYLGLL VVGPNGGLAT
101: QVAKFAQGVP FGFTNSLCID QNHGVLYFTD SSTTYSRRSH ISVIVSGDDT GRLMKYDMKN KQVSILLKNL KFPNGIAISK HGDFLLFVET TTCKIFKLWL
201: KTSKAGSVEV VSELPGFPDN IKRNKKGEFW VGVNSRRSKL LDWVLSKNWI KNNLVKIPFD ITKAHSFLAN NGFGGGSLAI RLSEDGHVVE ILEDPKRKRW
301: KFVSEVHEMN GNLWIGSVKL PFAIKKKVTT LEKFLDTNNE L

Best Arabidopsis Sequence Match ( AT2G41290.1 )
(BLAST)

001: MMKLLLVVAT SVALIFSVTD LSGEGPKHGG ESMLTVQIPD FRLIPTTGAL GPESFVFDFF GDGPYTGLSD GRIVKWLANE SRWIDFAVTT SAREGCEGPH
101: EHQRTEHVCG RPLGLAFDKS TGDLYIADAY MGLLKVGPTG GVATQVLPRE LNEALRFTNS LDINPRTGVV YFTDSSSVYQ RRNYIGAMMS GDKTGRLMKY
201: DNTKQVTTLL SNLAFVNGVA LSQNGDYLLV VETAMCRILR YWLNETSVKS QSHDNYEIFA EGLPGFPDNI KRSPRGGFWV GLNTKHSKLT KFAMSNAWLG
301: RAALGLPVDW MKVHSVWARY NGNGMAVRLS EDSGVILEVF EGKNENKWIS ISEVEEKDGT LWVGSVNTPF AGMYKI

Arabidopsis Description

SSL2Protein STRICTOSIDINE SYNTHASE-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLG8]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.