Factsheet for PGSC0003DMT400044685

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g055750.2.1	Tomato	golgi, plastid, vacuole	89.59	59.8
PGSC0003DMT400044684	Potato	vacuole	73.98	56.86
PGSC0003DMT400044531	Potato	vacuole	77.32	55.76
PGSC0003DMT400076777	Potato	vacuole	65.06	47.04
PGSC0003DMT400007661	Potato	vacuole	64.68	45.91
KRH66809	Soybean	endoplasmic reticulum	54.28	39.35
KRG95135	Soybean	endoplasmic reticulum	53.53	38.81
PGSC0003DMT400063282	Potato	extracellular, vacuole	20.82	36.13
PGSC0003DMT400015199	Potato	vacuole	44.61	30.69
PGSC0003DMT400007732	Potato	vacuole	43.49	29.92
PGSC0003DMT400063277	Potato	vacuole	34.94	28.31
PGSC0003DMT400056839	Potato	vacuole	31.23	26.92
PGSC0003DMT400063274	Potato	vacuole	31.97	25.6
PGSC0003DMT400048627	Potato	cytosol, golgi, mitochondrion, vacuole	32.34	25.51
PGSC0003DMT400063286	Potato	vacuole	31.23	25.15
PGSC0003DMT400030927	Potato	golgi, plasma membrane, vacuole	37.92	25.06
PGSC0003DMT400001736	Potato	cytosol, peroxisome, vacuole	23.42	22.74
PGSC0003DMT400005990	Potato	cytosol	17.84	16.61
PGSC0003DMT400003995	Potato	golgi, vacuole	21.56	15.51

Protein Annotations

EnsemblPlants:PGSC0003DMT400044685	EnsemblPlantsGene:PGSC0003DMG400017336	Gene3D:2.120.10.30	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016844	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	InterPro:Strictosidine_synthase
PANTHER:PTHR10426	PANTHER:PTHR10426:SF22	PGSC:PGSC0003DMG400017336	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF63829
TMHMM:TMhelix	UniParc:UPI0002962E80	UniProt:M1BGI3	MapMan:50.4.3	:	:

Description

Strictosidine synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400017336]

Coordinates

chr7:-:50850632..50851723

Molecular Weight (calculated)

29157.0 Da

IEP (calculated)

4.432

GRAVY (calculated)

0.071

Length

269 amino acids

Sequence
(BLAST)

001: MNASNILLLL IATVALFASV NLAFDDSENA LKSQNVLSKS EIIQLNGAIG PESVAFDPNG EGPYIGIADG RILKFQGSSW ADFAVTSSQR ENCTLPFAPE
101: MEHICGRPLG LRFDTKTGEL YIADAYFGIQ VVGPKGGLAT PLVQKLDGPL EGTHDTFAEL PGFPDNIRIN SKGEFWVALQ AIRSQLSFSN SEMGNALLKL
201: PFIAQQLDDL LNGGLLHATA IKLSEDGRVL EVLEDIEGKT LRSISEVQEK YGKLWFGSVM MPFLGLYGF

Best Arabidopsis Sequence Match ( AT3G57030.1 )
(BLAST)

001: MTMMIITVFL TVIAAVLAIL VKNSQTGSGI FAPPEISGSR DVFPSAKVVN LTGASGPESI AFDPAGEGPY VGVSDGRILK WRGEPLGWSD FAHTSSNRQE
101: CARPFAPELE HVCGRPLGLR FDKKTGDLYI ADAYFGLLVV GPAGGLAKPL VTEAEGQPFR FTNDLDIDEQ EDVIYFTDTS ARFQRRQFLA AVLNVDKTGR
201: FIKYDRSSKK ATVLLQGLAF ANGVALSKDR SFVLVVETTT CKILRLWLSG PNAGTHQVFA ELPGFPDNIR RNSNGEFWVA LHSKKGLFAK LSLTQTWFRD
301: LVLRLPISPQ RLHSLFTGGI PHATAIKLSE SGKVLEVLED KEGKTLRFIS EVEEKDGKLW IGSVLVPFLG VYDL

Arabidopsis Description

SSL10Protein STRICTOSIDINE SYNTHASE-LIKE 10 [Source:UniProtKB/Swiss-Prot;Acc:Q4V3D9]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.