Factsheet for Solyc03g053130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
vacuole 2
mitochondrion 2
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030927	Potato	golgi, plasma membrane, vacuole	97.34	99.02
VIT_05s0102g00880.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	73.43	74.88
KRH10120	Soybean	endoplasmic reticulum	69.57	70.24
KRH23218	Soybean	golgi, vacuole	69.57	70.24
Bra007457.1-P	Field mustard	golgi, vacuole	70.05	70.22
CDX71901	Canola	extracellular, golgi, vacuole	68.12	69.98
CDY05993	Canola	endoplasmic reticulum, golgi, vacuole	67.87	69.73
Bra014536.1-P	Field mustard	vacuole	69.32	69.32
AT3G59530.3	Thale cress	golgi, vacuole	67.15	68.98
CDX89027	Canola	endoplasmic reticulum, vacuole	66.43	68.07
EER92507	Sorghum	cytosol, golgi, mitochondrion, vacuole	61.35	61.65
TraesCS4B01G215300.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	61.35	61.5
TraesCS4D01G215800.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	61.11	61.26
TraesCS4A01G089000.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	61.11	61.26
Zm00001d047858_P001	Maize	endoplasmic reticulum, golgi, mitochondrion, vacuole	60.39	60.68
HORVU4Hr1G061230.2	Barley	peroxisome, vacuole	62.08	60.05
Os03t0263600-01	Rice	cytosol, golgi, mitochondrion, vacuole	61.11	59.25
GSMUA_Achr11P...	Banana	golgi, vacuole	47.83	51.56
Solyc06g073910.2.1	Tomato	cytosol, plasma membrane, vacuole	31.64	43.09
Solyc11g071800.1.1	Tomato	plastid, vacuole	40.1	42.46
Solyc07g055740.1.1	Tomato	vacuole	34.06	40.17
Solyc10g079610.1.1	Tomato	vacuole	35.99	40.05
Solyc04g040090.2.1	Tomato	vacuole	36.23	39.79
Solyc03g114540.1.1	Tomato	vacuole	29.71	36.61
Solyc03g114550.1.1	Tomato	vacuole	24.15	36.5
Solyc03g114560.2.1	Tomato	extracellular	28.5	36.09
Solyc03g114530.2.1	Tomato	vacuole	28.26	35.24
Solyc07g055750.2.1	Tomato	golgi, plastid, vacuole	33.82	34.74
Solyc12g039070.1.1	Tomato	nucleus	26.33	32.73
Solyc02g082900.2.1	Tomato	vacuole	25.6	28.57
Solyc05g025810.2.1	Tomato	plasma membrane, vacuole	23.43	27.4

Protein Annotations

Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0016020	GO:GO:0016787	GO:GO:0016788	GO:GO:0016844	InterPro:IPR011042
UniProt:K4BGL5	PFAM:PF03088	PANTHER:PTHR10426	PANTHER:PTHR10426:SF21	SUPFAM:SSF63829	EnsemblPlantsGene:Solyc03g053130.2
EnsemblPlants:Solyc03g053130.2.1	InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	UniParc:UPI0002768ADD	SEG:seg	:

Description

Protein STRICTOSIDINE SYNTHASE-LIKE 13 [Source:Projected from Arabidopsis thaliana (AT3G59530) UniProtKB/Swiss-Prot;Acc:Q9M1B4]

Coordinates

chr3:-:22154915..22156667

Molecular Weight (calculated)

46867.6 Da

IEP (calculated)

7.265

GRAVY (calculated)

-0.191

Length

414 amino acids

Sequence
(BLAST)

001: MPINDPHMEK RIQLIRSQLV SQRPHLFLLS LAFAFLVADP FGLSPVGDTD FNPVKNDIAP YKQVMESWHG DKNNRLGLGN LEFVNEIYGP ESLEFDILGH
101: GPYAGLADGR IVRWMGEDAG WETFAVVTRN WSEKLCAKGK DSTTPKQYRV EPECGRPLGL RFNKQTGDLY IADAYYGLLV VGPEGGVATS LATHVEGKRI
201: LFANDLDIHT NGSIFFTDTS KKYNRVNHFL IMLEGEDSGR LLRYDIATKS TNVVLDGLTF PNGVQLSKDQ TFLLFTETTN CRLMKYWIEG PKRGIVEIVA
301: NLPGFPDNVR VNEKGQFWVA IDCCRTRAQE VLINNPWMRS IYFRLPIQMR YLARLMGMKM YTVISLFNEN GEIIDVLQDK KGVVMKLVSE VREVNGKLWI
401: GTVAHNHIAT LPYP

Best Arabidopsis Sequence Match ( AT3G59530.1 )
(BLAST)

001: MEKKGQHGTY ESMMTHHPIL CIIALSVLFI AIDPFHMSPI GGREFKPVKH EVAPYKEVMG SWPRDNLSRL GNHGKLEFVD QVFGPESLEF DSLGRGPYTG
101: LADGRVVRWM GEAIGWETFS VVTSKWSEEA CVRGVDSTTN KQWKHEKLCG RPLGLRFHKE TGNLYIADAY YGLLVVGPEG GIATPLATHV EGKPILFAND
201: LDIHRNGSIF FTDTSKRYDR ANHFFILLEG ESTGRLLRYD PPTKTTHIVL EGLAFPNGIQ LSKDQSFLLF TETTNCRLVK YWLEGPKMGE VEVVADLPGF
301: PDNVRINEEG QFWVAIDCCR TPAQEVLTNN PWIRSIYFRL PIPMKLLAKT MGMRMYTVIS RFDEEGKVLE VLEDRQGKVM KLWIGTVAHN HIATLPYPLT
401: MNQ

Arabidopsis Description

SSL13Protein STRICTOSIDINE SYNTHASE-LIKE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1B4]
SUBAcon: [golgi,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.