CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, vacuole, cytosol

Predictor Summary:

plastid 1
vacuole 2
mitochondrion 2
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047858_P001	Maize	endoplasmic reticulum, golgi, mitochondrion, vacuole	92.72	92.72
TraesCS4A01G089000.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	81.55	81.36
TraesCS4D01G215800.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	81.07	80.87
TraesCS4B01G215300.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	80.83	80.63
Os03t0263600-01	Rice	cytosol, golgi, mitochondrion, vacuole	81.8	78.92
HORVU4Hr1G061230.2	Barley	peroxisome, vacuole	81.07	78.04
VIT_05s0102g00880.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	62.38	63.3
AT3G59530.3	Thale cress	golgi, vacuole	61.41	62.78
Bra014536.1-P	Field mustard	vacuole	62.62	62.32
Bra007457.1-P	Field mustard	golgi, vacuole	62.38	62.23
PGSC0003DMT400030927	Potato	golgi, plasma membrane, vacuole	61.41	62.16
CDX71901	Canola	extracellular, golgi, vacuole	60.68	62.03
KRH10120	Soybean	endoplasmic reticulum	61.41	61.71
CDY05993	Canola	endoplasmic reticulum, golgi, vacuole	60.19	61.54
CDX89027	Canola	endoplasmic reticulum, vacuole	60.19	61.39
Solyc03g053130.2.1	Tomato	extracellular	61.65	61.35
KRH23218	Soybean	golgi, vacuole	60.92	61.22
GSMUA_Achr11P...	Banana	golgi, vacuole	48.3	51.82
OQU75879	Sorghum	vacuole	30.83	41.5
EER90869	Sorghum	vacuole	39.32	40.7
KXG39404	Sorghum	golgi, vacuole	33.01	39.88
EES01841	Sorghum	vacuole	32.52	38.62
EER90208	Sorghum	vacuole	32.28	38.44
EES07680	Sorghum	golgi, vacuole	32.28	38.44
EES05427	Sorghum	vacuole	32.04	38.37
EES01763	Sorghum	vacuole	32.04	38.26
EER96672	Sorghum	vacuole	33.98	38.25
EES05895	Sorghum	golgi, vacuole	32.04	38.15
OQU85880	Sorghum	golgi, vacuole	32.04	38.15
EES17427	Sorghum	golgi, vacuole	31.31	37.61
OQU87434	Sorghum	golgi, vacuole	32.28	37.57
EER96671	Sorghum	endoplasmic reticulum, golgi	31.31	36.86
EES07950	Sorghum	vacuole	34.47	36.22
OQU76676	Sorghum	extracellular, golgi, vacuole	30.34	36.13
KXG27696	Sorghum	vacuole	33.98	35.9
OQU79673	Sorghum	vacuole	28.88	34.8
EES17425	Sorghum	extracellular	19.66	30.92
KXG36676	Sorghum	vacuole	24.27	27.78
KXG36678	Sorghum	vacuole	24.27	27.17
OQU92210	Sorghum	golgi, plastid, vacuole	25.0	23.25

Protein Annotations

Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	UniProt:C5WQ63	EnsemblPlants:EER92507	ProteinID:EER92507
ProteinID:EER92507.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009555	GO:GO:0009653	GO:GO:0009987	GO:GO:0010584	GO:GO:0016020	GO:GO:0016043
GO:GO:0016787	GO:GO:0016788	GO:GO:0016844	InterPro:IPR011042	PFAM:PF03088	PANTHER:PTHR10426
PANTHER:PTHR10426:SF21	EnsemblPlantsGene:SORBI_3001G428300	SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	TMHMM:TMhelix
UniParc:UPI0001A8263F	RefSeq:XP_002465509.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:70741181..70742890

Molecular Weight (calculated)

46896.2 Da

IEP (calculated)

7.618

GRAVY (calculated)

-0.337

Length

412 amino acids

Sequence
(BLAST)

001: MEEKRKLQWR RGRDGIVQYP HLFFAALALA LVVADPFGLS PLAGVDYRPV KHELAPYAEV MGSWPRDNAS RLRRGRLEFV GEVFGPESIE FDREGRGPYA
101: GLADGRVVRW MGEEAGWETF AVMNPEWSEE VCANGVNSTT RKQHEKEEFC GRPLGLRFHR ETGELYVADA YYGLMVIGQS GGVASSVARE ADGDLIRFAN
201: DLDIHRNGSV FFTDTSMRYS RKDHLNILLE GEGTGRLLRY DPETNAVHVV LKGLVFPNGV QISEDQQFLL FSETTNCRIM RYWLEGPRTG EVEVFANLPG
301: FPDNVRSNGK GQFWVAIDCC RTRAQAVFAK RPWLRTLYFK FPLTLKMLTR RAAKRMHTVL ALLDRDGRVV EVLEDRGREV MKLVSEVREV DRKLWIGTVA
401: HNHIATIPYP LD

Best Arabidopsis Sequence Match ( AT3G59530.1 )
(BLAST)

001: MEKKGQHGTY ESMMTHHPIL CIIALSVLFI AIDPFHMSPI GGREFKPVKH EVAPYKEVMG SWPRDNLSRL GNHGKLEFVD QVFGPESLEF DSLGRGPYTG
101: LADGRVVRWM GEAIGWETFS VVTSKWSEEA CVRGVDSTTN KQWKHEKLCG RPLGLRFHKE TGNLYIADAY YGLLVVGPEG GIATPLATHV EGKPILFAND
201: LDIHRNGSIF FTDTSKRYDR ANHFFILLEG ESTGRLLRYD PPTKTTHIVL EGLAFPNGIQ LSKDQSFLLF TETTNCRLVK YWLEGPKMGE VEVVADLPGF
301: PDNVRINEEG QFWVAIDCCR TPAQEVLTNN PWIRSIYFRL PIPMKLLAKT MGMRMYTVIS RFDEEGKVLE VLEDRQGKVM KLWIGTVAHN HIATLPYPLT
401: MNQ

Arabidopsis Description

SSL13Protein STRICTOSIDINE SYNTHASE-LIKE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1B4]
SUBAcon: [golgi,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.