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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 6
  • vacuole 6
  • plasma membrane 5
  • golgi 6
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, golgi
Any Predictor:plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:vacuole
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d020306_P001 Maize endoplasmic reticulum, vacuole 88.57 90.38
TraesCS5B01G195300.1 Wheat endoplasmic reticulum, extracellular, vacuole 72.57 73.41
TraesCS5D01G202700.1 Wheat vacuole 72.29 73.12
HORVU5Hr1G058910.2 Barley endoplasmic reticulum, extracellular, vacuole 71.71 72.54
TraesCS5A01G188300.1 Wheat extracellular, plasma membrane, vacuole 71.71 66.58
EER96672 Sorghum vacuole 57.14 54.64
EES01841 Sorghum vacuole 51.14 51.59
OQU75879 Sorghum vacuole 44.86 51.31
GSMUA_Achr3P06240_001 Banana cytosol, mitochondrion, peroxisome, vacuole 45.43 51.29
KXG39404 Sorghum golgi, vacuole 49.43 50.73
EES01763 Sorghum vacuole 49.71 50.43
OQU76676 Sorghum extracellular, golgi, vacuole 49.14 49.71
OQU87434 Sorghum golgi, vacuole 49.14 48.59
EES07680 Sorghum golgi, vacuole 47.71 48.27
OQU85880 Sorghum golgi, vacuole 47.43 47.98
EER90208 Sorghum vacuole 47.14 47.69
EES05895 Sorghum golgi, vacuole 46.86 47.4
EES05427 Sorghum vacuole 46.57 47.38
GSMUA_Achr5P05340_001 Banana vacuole 48.0 46.8
OQU79673 Sorghum vacuole 45.14 46.2
EES17427 Sorghum golgi, vacuole 45.14 46.06
VIT_10s0042g00010.t01 Wine grape vacuole 40.57 45.08
VIT_13s0074g00070.t01 Wine grape vacuole 34.29 43.8
VIT_00s0575g00010.t01 Wine grape vacuole 38.86 43.59
VIT_10s0042g00020.t01 Wine grape vacuole 40.0 43.48
VIT_13s0074g00080.t01 Wine grape vacuole 40.0 43.48
VIT_10s0071g00010.t01 Wine grape vacuole 40.0 43.48
VIT_10s0042g00050.t01 Wine grape vacuole 40.0 43.48
VIT_10s0071g00020.t01 Wine grape vacuole 38.29 43.37
VIT_10s0042g00030.t01 Wine grape vacuole 33.43 42.86
VIT_00s0575g00020.t01 Wine grape vacuole 39.43 42.86
VIT_17s0000g04580.t01 Wine grape extracellular, vacuole 22.0 42.54
Bra008125.1-P Field mustard cytosol, peroxisome, vacuole 27.14 40.43
PGSC0003DMT400056839 Potato vacuole 35.71 40.06
VIT_17s0000g04600.t01 Wine grape vacuole 39.14 39.94
CDX73037 Canola vacuole 36.57 39.02
CDX96505 Canola vacuole 36.57 39.02
Solyc12g039070.1.1 Tomato nucleus 36.86 38.74
PGSC0003DMT400063282 Potato extracellular, vacuole 17.14 38.71
KRH07462 Soybean vacuole 38.0 38.33
VIT_10s0071g00250.t01 Wine grape vacuole 36.86 37.94
CDY47729 Canola vacuole 35.14 37.85
AT1G74000.1 Thale cress vacuole 35.43 37.69
Bra008124.1-P Field mustard vacuole 34.86 37.54
KRH45407 Soybean nucleus 37.14 37.25
CDY45863 Canola vacuole 34.57 37.23
Solyc03g114550.1.1 Tomato vacuole 29.14 37.23
AT1G74010.1 Thale cress vacuole 34.29 36.92
CDX73038 Canola vacuole 34.29 36.92
CDX96506 Canola vacuole 34.29 36.92
KRH54773 Soybean vacuole 35.14 36.5
PGSC0003DMT400001736 Potato cytosol, peroxisome, vacuole 28.86 36.46
EES17425 Sorghum extracellular 27.14 36.26
Bra008127.1-P Field mustard vacuole 33.71 35.98
PGSC0003DMT400063277 Potato vacuole 34.0 35.84
CDY45861 Canola vacuole 33.43 35.45
Bra003820.1-P Field mustard vacuole 32.57 35.29
Solyc03g114530.2.1 Tomato vacuole 33.43 35.24
AT1G74020.1 Thale cress vacuole 33.71 35.22
EES07950 Sorghum vacuole 39.14 34.95
EER90869 Sorghum vacuole 39.43 34.67
Solyc03g114560.2.1 Tomato extracellular 32.29 34.56
Bra008126.1-P Field mustard vacuole 32.29 34.56
CDY47728 Canola vacuole 32.29 34.56
KXG27696 Sorghum vacuole 38.29 34.36
CDY66189 Canola vacuole 29.14 34.34
KRH03206 Soybean vacuole 32.86 34.23
PGSC0003DMT400063274 Potato vacuole 32.86 34.23
CDX96507 Canola vacuole 31.71 34.05
Bra015943.1-P Field mustard vacuole 31.71 34.05
CDX73039 Canola vacuole 31.71 34.05
CDY66188 Canola vacuole 31.71 33.84
CDX68204 Canola vacuole 31.71 33.84
Solyc03g114540.1.1 Tomato vacuole 32.29 33.63
KRH56734 Soybean vacuole 32.86 33.63
PGSC0003DMT400063286 Potato vacuole 32.0 33.53
KRH63133 Soybean peroxisome, vacuole 15.71 31.79
VIT_17s0000g04610.t01 Wine grape vacuole 33.14 31.61
EER92507 Sorghum cytosol, golgi, mitochondrion, vacuole 36.86 31.31
VIT_17s0000g04590.t01 Wine grape endoplasmic reticulum, peroxisome, vacuole 39.71 30.68
KXG36678 Sorghum vacuole 26.57 25.27
KXG36676 Sorghum vacuole 25.14 24.44
OQU92210 Sorghum golgi, plastid, vacuole 27.43 21.67
Bra015944.1-P Field mustard vacuole 33.71 19.77
Protein Annotations
Gene3D:2.120.10.30MapMan:50.4.3InterPro:6-blade_b-propeller_TolB-likeEntrezGene:8056183UniProt:C5XBD2EnsemblPlants:EER96671
ProteinID:EER96671ProteinID:EER96671.1GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0016020GO:GO:0016787GO:GO:0016788GO:GO:0016844InterPro:IPR011042PFAM:PF03088
PANTHER:PTHR10426PANTHER:PTHR10426:SF60EnsemblPlantsGene:SORBI_3002G186600SUPFAM:SSF63829SignalP:SignalP-noTMInterPro:Strictosidine_synth_cons-reg
InterPro:Strictosidine_synthaseTMHMM:TMhelixUniParc:UPI0001A83AAERefSeq:XP_002460150.1SEG:seg:
Description
hypothetical protein
Coordinates
chr2:+:57083636..57086473
Molecular Weight (calculated)
37064.8 Da
IEP (calculated)
7.547
GRAVY (calculated)
-0.057
Length
350 amino acids
Sequence
(BLAST)
001: MAAAAATRSL HSFLVLLILL LPAAAAAASS SYETKSIDPG LVVMTLPEPV SGPESLAFDG RGGGPYSGVS DGRILRWQGR LRGWTEFAYN SKHKSMAVCA
101: PDKKLVVPES LCGRPLGLQF HRRSGDLFIA DAYLGLLRVA ARGGLAEVVA TEAGGEPFNF LNGLDVDQRT GDVYFTDSST TYRRSDYLLV VALGDETGRL
201: LRYDRRSRRV SVLQSGLSYP NGVAVSADGT HVVVAHTALC ELRRYWVRGA RAGTSDSETF AELPGYPDNL RADGRGGYWV ALSNGVAAAG GGGEEAAPTV
301: AVRVSREGNV TEALDGFSFV SVSEVAERGG ALWVGSVDTP YAGALKRRTS
Best Arabidopsis Sequence Match ( AT1G08470.1 )
(BLAST)
001: MAMSILAKIF LVFAIYCAID PFSHSSISKF PDFKTYKIDM PPLSSLPKER DRQNLLQNSE IRFLNEVQGP ESIAFDPQGR GPYTGVADGR ILFWNGTRWT
101: DFAYTSNNRS ELCDPKPSLL DYLKDEDICG RPLGLRFDKK NGDLYIADAY LGIMKVGPEG GLATSVTNEA DGVPLRFTND LDIDDEGNVY FTDSSSFFQR
201: RKFMLLIVSG EDSGRVLKYN PKTKETTTLV RNLQFPNGLS LGKDGSFFIF CEGSIGRLRK YWLKGEKAGT SEVVALLHGF PDNIRTNKDG DFWVAVHCHR
301: NIFTHLMAHY PRVRKFFLKL PISVKFQYLL QVGGWPHAVA VKYSEEGKVL KVLEDSKGKV VKAVSEVEEK DGKLWMGSVL MSFIAVYDLP
Arabidopsis Description
SSL3SSL3 [Source:UniProtKB/TrEMBL;Acc:A0A178WK70]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.