Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 6
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
plasma membrane: 23508561 mitochondrion: 27297264 plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER90869 | Sorghum | vacuole | 71.8 | 97.24 |
| HORVU5Hr1G114720.1 | Barley | plastid | 32.65 | 92.63 |
| TraesCS5B01G395100.1 | Wheat | vacuole | 63.82 | 86.22 |
| HORVU5Hr1G095260.1 | Barley | extracellular | 63.82 | 86.22 |
| TraesCS5A01G390200.1 | Wheat | golgi | 63.64 | 86.18 |
| TraesCS5D01G400000.1 | Wheat | golgi | 63.45 | 85.93 |
| Os03t0750700-01 | Rice | plasma membrane | 63.08 | 85.21 |
| HORVU5Hr1G114800.1 | Barley | extracellular | 31.54 | 79.07 |
| GSMUA_Achr3P30810_001 | Banana | endoplasmic reticulum, vacuole | 52.69 | 73.01 |
| VIT_06s0009g00850.t01 | Wine grape | cytosol | 46.57 | 71.51 |
| Solyc06g073910.2.1 | Tomato | cytosol, plasma membrane, vacuole | 38.59 | 68.42 |
| Bra018623.1-P | Field mustard | cytosol | 42.49 | 65.24 |
| CDX92388 | Canola | vacuole | 44.16 | 65.03 |
| Solyc11g071800.1.1 | Tomato | plastid, vacuole | 46.94 | 64.71 |
| PGSC0003DMT400015199 | Potato | vacuole | 46.94 | 64.71 |
| PGSC0003DMT400007732 | Potato | vacuole | 46.75 | 64.45 |
| CDY16615 | Canola | endoplasmic reticulum, extracellular, vacuole | 46.94 | 64.05 |
| AT5G22020.2 | Thale cress | vacuole | 46.75 | 63.8 |
| Bra002383.1-P | Field mustard | vacuole | 46.57 | 63.54 |
| AT1G08470.1 | Thale cress | endoplasmic reticulum, vacuole | 45.08 | 62.31 |
| CDX93560 | Canola | vacuole | 44.71 | 61.32 |
| CDX95058 | Canola | vacuole | 42.12 | 60.7 |
| KRH26734 | Soybean | vacuole | 40.63 | 60.0 |
| KRH22599 | Soybean | vacuole | 41.93 | 58.7 |
| KRH56180 | Soybean | endoplasmic reticulum | 47.5 | 58.05 |
| HORVU6Hr1G025030.1 | Barley | cytosol | 11.87 | 57.66 |
| Zm00001d029115_P001 | Maize | extracellular, vacuole | 20.04 | 46.15 |
| Zm00001d029117_P001 | Maize | vacuole | 25.97 | 41.42 |
| Zm00001d029111_P001 | Maize | vacuole | 25.79 | 41.12 |
| Zm00001d020306_P001 | Maize | endoplasmic reticulum, vacuole | 26.16 | 41.11 |
| Zm00001d029108_P001 | Maize | vacuole | 24.12 | 41.01 |
| Zm00001d012368_P001 | Maize | golgi, vacuole | 25.6 | 40.0 |
| Zm00001d012377_P001 | Maize | vacuole | 25.6 | 40.0 |
| Zm00001d012371_P001 | Maize | golgi, vacuole | 25.6 | 40.0 |
| Zm00001d012366_P001 | Maize | vacuole | 25.6 | 40.0 |
| Zm00001d047858_P001 | Maize | endoplasmic reticulum, golgi, mitochondrion, vacuole | 30.43 | 39.81 |
| Zm00001d012363_P001 | Maize | endoplasmic reticulum, extracellular | 10.76 | 39.73 |
| Zm00001d012252_P001 | Maize | vacuole | 25.05 | 39.13 |
| Zm00001d012249_P001 | Maize | vacuole | 25.05 | 39.13 |
| Zm00001d012375_P001 | Maize | vacuole | 24.3 | 39.1 |
| Zm00001d020307_P001 | Maize | endoplasmic reticulum, vacuole | 14.84 | 38.84 |
| Zm00001d020308_P001 | Maize | cytosol, plastid, vacuole | 11.5 | 38.51 |
| Zm00001d052471_P001 | Maize | vacuole | 27.09 | 30.04 |
| Zm00001d006853_P001 | Maize | vacuole | 20.04 | 29.43 |
| Zm00001d012373_P001 | Maize | vacuole | 25.23 | 23.13 |
Protein Annotations
| Gene3D:2.120.10.30 | MapMan:50.4.3 | InterPro:6-blade_b-propeller_TolB-like | UniProt:A0A1D6L4P1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016844 | InterPro:IPR011042 | ProteinID:ONM09335.1 |
| PFAM:PF03088 | PANTHER:PTHR10426 | PANTHER:PTHR10426:SF24 | SUPFAM:SSF63829 | SignalP:SignalP-noTM | InterPro:Strictosidine_synth_cons-reg |
| InterPro:Strictosidine_synthase | TMHMM:TMhelix | UniParc:UPI0008452A2A | EnsemblPlantsGene:Zm00001d034032 | EnsemblPlants:Zm00001d034032_P001 | EnsemblPlants:Zm00001d034032_T001 |
| SEG:seg | : | : | : | : | : |
Description
Protein STRICTOSIDINE SYNTHASE-LIKE 3
Coordinates
chr1:-:281626478..281630659
Molecular Weight (calculated)
59220.8 Da
IEP (calculated)
8.750
GRAVY (calculated)
-0.292
Length
539 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPGVVAAA LLVAVLAAFC GTDPLRMGSM AGFPGFEAHF VDLPDPAEMP PHADERERLR GAEVRFRGDV QGPESVAFDP QGRGPYTGVA DGRVVFWDGE
101: RWVPFATASP RWTQELCGGP KASPVEYLPN EHICGRPLGL RFDKKTGDLY IADAYFGLLK VGPEGGLATP LATEAEGVRL NFTNDLDLDD EGNVYFTDSS
201: IHYQRRSRLR HSGRLRRPAD APTPNTTLAH ALVRDQPAGA SDGWHAEAAN LARTRFQPSA RGAAPCPGGD RQHRLRACDP LPATCPLAAR APSQDPHPPD
301: VPYKRLALCR QDAAEALASP AALAKGRRPT RAVATSWNFM QLVFSGDPSG RLLKYNPQTK ETTVLHRNLQ FPNGVSMSKD GSFFVFCEGS RGRHSIFVFF
401: GDRLSRYWLK GEKAGTVDLF AILPGFPDNV RTNEKGEFWV AIHCRRSLYA RLMSRHVKLR KFLLSLPIPA KYHYLMQIGG RLHAVIIKYS PEGQVLDILE
501: DTKGEVVRAV SEVEEKDGKL WIGSVLMPFI AVFDLAKAS
101: RWVPFATASP RWTQELCGGP KASPVEYLPN EHICGRPLGL RFDKKTGDLY IADAYFGLLK VGPEGGLATP LATEAEGVRL NFTNDLDLDD EGNVYFTDSS
201: IHYQRRSRLR HSGRLRRPAD APTPNTTLAH ALVRDQPAGA SDGWHAEAAN LARTRFQPSA RGAAPCPGGD RQHRLRACDP LPATCPLAAR APSQDPHPPD
301: VPYKRLALCR QDAAEALASP AALAKGRRPT RAVATSWNFM QLVFSGDPSG RLLKYNPQTK ETTVLHRNLQ FPNGVSMSKD GSFFVFCEGS RGRHSIFVFF
401: GDRLSRYWLK GEKAGTVDLF AILPGFPDNV RTNEKGEFWV AIHCRRSLYA RLMSRHVKLR KFLLSLPIPA KYHYLMQIGG RLHAVIIKYS PEGQVLDILE
501: DTKGEVVRAV SEVEEKDGKL WIGSVLMPFI AVFDLAKAS
001: MALFLSPKTI TLLFFSLSLA LYCSIDPFHH CAISDFPNFV SHEVISPRPD EVPWERDSQN SLQKSKILFF NQIQGPESVA FDSLGRGPYT GVADGRVLFW
101: DGEKWIDFAY TSSNRSEICD PKPSALSYLR NEHICGRPLG LRFDKRTGDL YIADAYMGLL KVGPEGGLAT PLVTEAEGVP LGFTNDLDIA DDGTVYFTDS
201: SISYQRRNFL QLVFSGDNTG RVLKYDPVAK KAVVLVSNLQ FPNGVSISRD GSFFVFCEGD IGSLRRYWLK GEKAGTTDVF AYLPGHPDNV RTNQKGEFWV
301: ALHCRRNYYS YLMARYPKLR MFILRLPITA RTHYSFQIGL RPHGLVVKYS PEGKLMHVLE DSEGKVVRSV SEVEEKDGKL WMGSVLMNFV AVYDL
101: DGEKWIDFAY TSSNRSEICD PKPSALSYLR NEHICGRPLG LRFDKRTGDL YIADAYMGLL KVGPEGGLAT PLVTEAEGVP LGFTNDLDIA DDGTVYFTDS
201: SISYQRRNFL QLVFSGDNTG RVLKYDPVAK KAVVLVSNLQ FPNGVSISRD GSFFVFCEGD IGSLRRYWLK GEKAGTTDVF AYLPGHPDNV RTNQKGEFWV
301: ALHCRRNYYS YLMARYPKLR MFILRLPITA RTHYSFQIGL RPHGLVVKYS PEGKLMHVLE DSEGKVVRSV SEVEEKDGKL WMGSVLMNFV AVYDL
Arabidopsis Description
At5g22020 [Source:UniProtKB/TrEMBL;Acc:Q9C586]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.