Factsheet for VIT_06s0009g00850.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
vacuole 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g073910.2.1	Tomato	cytosol, plasma membrane, vacuole	62.39	72.04
Bra018623.1-P	Field mustard	cytosol	70.94	70.94
PGSC0003DMT400015199	Potato	vacuole	78.35	70.33
Solyc11g071800.1.1	Tomato	plastid, vacuole	78.06	70.08
PGSC0003DMT400007732	Potato	vacuole	78.06	70.08
HORVU5Hr1G114720.1	Barley	plastid	37.89	70.0
AT1G08470.1	Thale cress	endoplasmic reticulum, vacuole	72.65	65.38
GSMUA_Achr3P30810_001	Banana	endoplasmic reticulum, vacuole	72.08	65.04
KRH26734	Soybean	vacuole	67.24	64.66
CDX95058	Canola	vacuole	68.66	64.44
CDX93560	Canola	vacuole	70.94	63.36
EER90869	Sorghum	vacuole	71.23	62.81
GSMUA_Achr8P04740_001	Banana	endoplasmic reticulum, golgi, vacuole	71.79	60.72
TraesCS5D01G400000.1	Wheat	golgi	68.38	60.3
TraesCS5A01G390200.1	Wheat	golgi	68.38	60.3
TraesCS5B01G395100.1	Wheat	vacuole	68.09	59.9
Os03t0750700-01	Rice	plasma membrane	68.09	59.9
KRH56180	Soybean	endoplasmic reticulum	75.21	59.86
KRH22599	Soybean	vacuole	65.53	59.74
HORVU5Hr1G095260.1	Barley	extracellular	67.81	59.65
HORVU5Hr1G114800.1	Barley	extracellular	30.48	49.77
VIT_08s0007g05370.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	49.57	47.03
Zm00001d034032_P001	Maize	plasma membrane	71.51	46.57
VIT_10s0042g00010.t01	Wine grape	vacuole	40.17	44.76
VIT_13s0074g00070.t01	Wine grape	vacuole	34.47	44.16
VIT_00s0575g00010.t01	Wine grape	vacuole	38.75	43.59
VIT_13s0074g00080.t01	Wine grape	vacuole	39.89	43.48
VIT_10s0071g00020.t01	Wine grape	vacuole	38.18	43.37
VIT_10s0042g00050.t01	Wine grape	vacuole	39.6	43.17
VIT_10s0042g00020.t01	Wine grape	vacuole	39.6	43.17
VIT_00s0575g00020.t01	Wine grape	vacuole	39.32	42.86
VIT_10s0071g00010.t01	Wine grape	vacuole	39.03	42.55
VIT_10s0042g00030.t01	Wine grape	vacuole	33.05	42.49
VIT_08s0007g05360.t01	Wine grape	vacuole	45.58	42.33
VIT_05s0102g00880.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	47.86	41.38
VIT_17s0000g04580.t01	Wine grape	extracellular, vacuole	20.8	40.33
VIT_10s0071g00250.t01	Wine grape	vacuole	38.75	40.0
VIT_17s0000g04600.t01	Wine grape	vacuole	38.75	39.65
VIT_17s0000g04610.t01	Wine grape	vacuole	35.9	34.33
HORVU6Hr1G025030.1	Barley	cytosol	10.26	32.43
VIT_04s0210g00060.t01	Wine grape	cytosol, mitochondrion	24.79	32.34
VIT_11s0016g00860.t01	Wine grape	golgi, vacuole	30.77	29.59
VIT_17s0000g04590.t01	Wine grape	endoplasmic reticulum, peroxisome, vacuole	37.61	29.14
VIT_11s0016g00880.t01	Wine grape	plastid	30.48	29.08
VIT_04s0210g00100.t01	Wine grape	cytosol	13.11	26.29
VIT_04s0210g00120.t01	Wine grape	vacuole	28.21	26.12
VIT_04s0210g00080.t01	Wine grape	vacuole	28.21	26.12
VIT_04s0210g00130.t01	Wine grape	plasma membrane, vacuole	20.51	25.17
VIT_04s0210g00090.t01	Wine grape	mitochondrion, vacuole	13.68	24.49
VIT_04s0210g00050.t01	Wine grape	plastid	28.49	23.98
VIT_11s0016g00870.t01	Wine grape	plasma membrane, vacuole	31.05	23.64
VIT_04s0210g00040.t01	Wine grape	cytosol, peroxisome, vacuole	20.23	18.93
VIT_04s0210g00030.t01	Wine grape	vacuole	28.49	12.94

Protein Annotations

EntrezGene:100251360	wikigene:100251360	Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	ProteinID:CCB49187
ProteinID:CCB49187.1	UniProt:F6HAA8	EMBL:FN595504	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005783
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016020	GO:GO:0016787	GO:GO:0016788
GO:GO:0016844	InterPro:IPR011042	EntrezGene:LOC100251360	wikigene:LOC100251360	PFAM:PF03088	PANTHER:PTHR10426
PANTHER:PTHR10426:SF24	SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	TIGR:TC63445	UniParc:UPI000210A9DF
ArrayExpress:VIT_06s0009g00850	EnsemblPlantsGene:VIT_06s0009g00850	EnsemblPlants:VIT_06s0009g00850.t01	unigene:Vvi.11575	RefSeq:XP_002278088	RefSeq:XP_002278088.1
RefSeq:XP_002278122	RefSeq:XP_002278122.1	RefSeq:XP_002278142	RefSeq:XP_002278142.1	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:11840584..11853396

Molecular Weight (calculated)

39399.4 Da

IEP (calculated)

7.847

GRAVY (calculated)

-0.264

Length

351 amino acids

Sequence
(BLAST)

001: MPPWSEVPAA KDDRNLLQKA EIKFLNQVQG PESVAFDPLG RGPYTGVADG RILFWNGEAW SDFAYTSPNR SELCDPKPSP LSYLKNEHIC GRPLGLRFNK
101: RTGDLYIADS YLGLMKVGPE GGLATSLVTE ADGVPLRFTN DLDIDDAGNI YFTDSSSKYQ RRNFMQLVFS SEDSGRLLKY DPLTKETTVL LRGLQFPNGV
201: SLSKDGSFLV LCEGSPGRLV KYWLKGDKAG TSEVFAILPG YPDNVRTNEK GEFWVAIHCR RTMYSYLCGL YPKLRMFLLK LPIPTRYQYL LHIGGRLHAV
301: VVKYSPEGKL VKILEDSEGK VVRAVSEVEE REGKLWMGSV LMPFVAVYQL E

Best Arabidopsis Sequence Match ( AT1G08470.1 )
(BLAST)

001: MAMSILAKIF LVFAIYCAID PFSHSSISKF PDFKTYKIDM PPLSSLPKER DRQNLLQNSE IRFLNEVQGP ESIAFDPQGR GPYTGVADGR ILFWNGTRWT
101: DFAYTSNNRS ELCDPKPSLL DYLKDEDICG RPLGLRFDKK NGDLYIADAY LGIMKVGPEG GLATSVTNEA DGVPLRFTND LDIDDEGNVY FTDSSSFFQR
201: RKFMLLIVSG EDSGRVLKYN PKTKETTTLV RNLQFPNGLS LGKDGSFFIF CEGSIGRLRK YWLKGEKAGT SEVVALLHGF PDNIRTNKDG DFWVAVHCHR
301: NIFTHLMAHY PRVRKFFLKL PISVKFQYLL QVGGWPHAVA VKYSEEGKVL KVLEDSKGKV VKAVSEVEEK DGKLWMGSVL MSFIAVYDLP

Arabidopsis Description

SSL3SSL3 [Source:UniProtKB/TrEMBL;Acc:A0A178WK70]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.