Factsheet for VIT_04s0210g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 1
mitochondrion 1
vacuole 4
extracellular 1
endoplasmic reticulum 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	vacuole
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03800.t01
VIT_09s0002g03770.t01
VIT_10s0003g01830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51450.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944
AT3G51450.1	VIT_09s0002g03770.t01	AT3G16310.1	21798944
AT3G51450.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0210g00050.t01	Wine grape	plastid	50.06	92.81
VIT_04s0210g00060.t01	Wine grape	cytosol, mitochondrion	25.61	73.61
VIT_04s0210g00120.t01	Wine grape	vacuole	35.06	71.5
VIT_04s0210g00080.t01	Wine grape	vacuole	34.93	71.24
VIT_04s0210g00100.t01	Wine grape	cytosol	16.04	70.86
VIT_04s0210g00090.t01	Wine grape	mitochondrion, vacuole	17.85	70.41
VIT_04s0210g00130.t01	Wine grape	plasma membrane, vacuole	24.45	66.08
VIT_04s0210g00040.t01	Wine grape	cytosol, peroxisome, vacuole	30.14	62.13
PGSC0003DMT400003995	Potato	golgi, vacuole	28.2	58.29
Solyc02g082900.2.1	Tomato	vacuole	27.3	56.87
AT3G51430.1	Thale cress	golgi, vacuole	25.23	52.56
CDY33280	Canola	golgi, vacuole	25.1	52.43
CDY16307	Canola	golgi, vacuole	25.1	52.43
CDX73720	Canola	golgi, vacuole	25.23	52.42
AT3G51450.1	Thale cress	vacuole	25.1	52.29
KRH69688	Soybean	golgi, vacuole	24.58	51.77
Os10t0543500-01	Rice	plasma membrane	17.08	51.76
AT3G51440.1	Thale cress	golgi, vacuole	24.45	50.94
CDY33279	Canola	golgi, vacuole	24.45	50.94
Bra038899.1-P	Field mustard	golgi, vacuole	24.45	50.94
AT3G51420.1	Thale cress	golgi, vacuole	24.32	50.81
GSMUA_AchrUn_...	Banana	plastid	16.43	50.8
KRH07935	Soybean	endoplasmic reticulum	24.58	50.26
CDY16306	Canola	golgi, vacuole	22.9	49.58
TraesCS1A01G203800.1	Wheat	cytosol, plastid, vacuole	15.39	48.77
HORVU1Hr1G052450.8	Barley	extracellular, golgi, vacuole	23.16	48.64
TraesCS1B01G217600.1	Wheat	extracellular, golgi, vacuole	23.03	48.5
TraesCS1D01G207200.2	Wheat	extracellular, golgi, vacuole	22.9	48.23
Bra038898.1-P	Field mustard	golgi, vacuole	24.58	47.86
OQU92210	Sorghum	golgi, plastid, vacuole	26.91	46.95
KRH69689	Soybean	plastid	23.67	46.21
Bra036798.1-P	Field mustard	vacuole	24.45	45.65
CDX78005	Canola	vacuole	24.32	45.41
VIT_11s0016g00860.t01	Wine grape	golgi, vacuole	16.56	35.07
VIT_11s0016g00880.t01	Wine grape	plastid	15.91	33.42
VIT_13s0074g00070.t01	Wine grape	vacuole	10.48	29.56
VIT_10s0042g00030.t01	Wine grape	vacuole	10.22	28.94
VIT_06s0009g00850.t01	Wine grape	cytosol	12.94	28.49
VIT_10s0042g00010.t01	Wine grape	vacuole	11.51	28.25
VIT_11s0016g00870.t01	Wine grape	plasma membrane, vacuole	16.69	27.98
VIT_10s0071g00020.t01	Wine grape	vacuole	11.13	27.83
VIT_10s0042g00020.t01	Wine grape	vacuole	11.51	27.64
VIT_00s0575g00020.t01	Wine grape	vacuole	11.51	27.64
VIT_10s0042g00050.t01	Wine grape	vacuole	11.38	27.33
VIT_13s0074g00080.t01	Wine grape	vacuole	11.38	27.33
VIT_00s0575g00010.t01	Wine grape	vacuole	11.0	27.24
VIT_10s0071g00010.t01	Wine grape	vacuole	11.13	26.71
VIT_10s0071g00250.t01	Wine grape	vacuole	11.38	25.88
VIT_08s0007g05370.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	11.77	24.59
VIT_17s0000g04600.t01	Wine grape	vacuole	10.74	24.2
VIT_17s0000g04580.t01	Wine grape	extracellular, vacuole	5.56	23.76
VIT_08s0007g05360.t01	Wine grape	vacuole	11.51	23.55
VIT_17s0000g04610.t01	Wine grape	vacuole	11.0	23.16
VIT_05s0102g00880.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	11.51	21.92
VIT_17s0000g04590.t01	Wine grape	endoplasmic reticulum, peroxisome, vacuole	10.74	18.32

Protein Annotations

EntrezGene:100254111	wikigene:100254111	EntrezGene:100259998	wikigene:100259998	Gene3D:2.120.10.30	MapMan:50.4.3
InterPro:6-blade_b-propeller_TolB-like	EMBL:AM440521	EMBL:AM488281	ProteinID:CAN68853	ProteinID:CAN68853.1	ProteinID:CAN69510
ProteinID:CAN69510.1	ProteinID:CCB61036	ProteinID:CCB61036.1	UniProt:F6I269	EMBL:FN596531	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016788	GO:GO:0016844	InterPro:IPR011042	EntrezGene:LOC100254111	wikigene:LOC100254111	EntrezGene:LOC100259998
wikigene:LOC100259998	PFAM:PF03088	PANTHER:PTHR10426	PANTHER:PTHR10426:SF58	SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg
InterPro:Strictosidine_synthase	TMHMM:TMhelix	UniParc:UPI000210A811	ArrayExpress:VIT_04s0210g00030	EnsemblPlantsGene:VIT_04s0210g00030	EnsemblPlants:VIT_04s0210g00030.t01
unigene:Vvi.25347	RefSeq:XP_002264366	RefSeq:XP_002264366.2	RefSeq:XP_002268316	RefSeq:XP_002268316.2	SEG:seg

Description

No Description!

Coordinates

chr4:+:20407497..20425854

Molecular Weight (calculated)

85725.3 Da

IEP (calculated)

5.343

GRAVY (calculated)

-0.038

Length

773 amino acids

Sequence
(BLAST)

001: MAESKPSDTS TTRRSSSWSF GLLVLILTPV AAAIFLYQLD SFDPASLPTH EFSQEPMPVP KLNPRMLQGS EMIGQGNLLG PEDIAYDANS HLIYTGCADG
101: WVKRVTLNES AANSVVHNWA FTGGRPLGVA LGRAGEVLVA DAEKGLLEIS GDGVMKLLTD EAEGLKFKQT NAVDVAVDGM IYFTDASYKY GLIEFIWEIL
201: EGRPHGRLLS FDPSTQETIV LLRDLYLANG VVVSPDQTSV VFCETLMKRC IKYYIQGERK GSMEKFIDNL SGMPDNILYD GEGHYWIALA TGTKGLWDLA
301: LKYPSIRKVM AILERYIGRP HIEKNGGILA VDLEGKPIAH YYDPELSMVS SGIKVGKYLY CGSFVKPYII RLDLDQHAAH TITNRVSAAP MAKSKPSDPN
401: TTRKSSSWSL ALLVSILTPV AAAIFLYQFD SFDPASLPTH VFSQEPMSVP RINSRLLHES EMIGLGKLLG PEDIAYDTNS HLIYTGCADG WIKKVTLNDS
501: AVNSVVHDWA FTGGRPLGVV LGRAGEVLVA DADKGLLEIS EDGVVKLLTN EAEGIRFKLT DAVDVAVDGM IYFTDASYKY SFKDFIWDML ELRPHGRLLS
601: FDPSTQETKV LVRDLYFANG VVVSPDQTFL IFCESFMKRC SKYYLQGERK GSMDKFIDNL PGMPDNILYD GEGHYWIGLA TGYNDLWDLA FKYPSIRKVM
701: AIMEKFIGMP EIEKNGGVLA IDLEGKPIAH YYDPKLSLVS SGIKIDKYLY CGFIVKPYMI RLDLDQHAAR TTL

Best Arabidopsis Sequence Match ( AT3G51430.1 )
(BLAST)

001: MPMFYSSRFL FFFTIVPLLV SIALYQLDTF DPAPVPSEAY ASSTTSIPPL ISDKYLTGAE FIGVGLLDKP EDIAYHQDSN LIYTGCIDGW VKRVSVHDSA
101: NDSVVEDWVN TGGRPLGIAF GVHGEVIVAD AYKGLLNISG DGKKTELLTD QAEGVKFKLT DVVAVADNGV LYFTDASYKY TLHQVKFDIL EGKPHGRLMS
201: FDPTTRVTRV LLKDLYFANG VSMSPDQTHL IFCETPMRRC SKYYINEERV EVFIQGLPGY PDNIRYDGDG HYWIAMVSGA STLWRLSMKY PFLRKITAIA
301: AKYGVELMFM KNAGVLQVDL DGNPIAYYHD QRLSHITTGI KIGNYLYCGN ILHSYIIRLD LLKYPAQKKK L

Arabidopsis Description

SSL5Protein STRICTOSIDINE SYNTHASE-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAZ7]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.