Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, vacuole
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 2
- mitochondrion 3
- vacuole 4
- endoplasmic reticulum 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0010g03800.t01 | |
| VIT_09s0002g03770.t01 | |
| VIT_10s0003g01830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G51450.1 | VIT_01s0010g03800.t01 | AT1G27300.1 | 21798944 |
| AT3G51450.1 | VIT_09s0002g03770.t01 | AT3G16310.1 | 21798944 |
| AT3G51450.1 | VIT_10s0003g01830.t01 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0210g00130.t01 | Wine grape | plasma membrane, vacuole | 91.33 | 62.59 |
| VIT_04s0210g00080.t01 | Wine grape | vacuole | 92.86 | 48.02 |
| VIT_04s0210g00120.t01 | Wine grape | vacuole | 92.35 | 47.76 |
| VIT_04s0210g00040.t01 | Wine grape | cytosol, peroxisome, vacuole | 73.98 | 38.67 |
| GSMUA_AchrUn_... | Banana | plastid | 46.94 | 36.8 |
| VIT_04s0210g00050.t01 | Wine grape | plastid | 72.45 | 34.05 |
| VIT_04s0210g00060.t01 | Wine grape | cytosol, mitochondrion | 38.78 | 28.25 |
| PGSC0003DMT400003995 | Potato | golgi, vacuole | 53.06 | 27.81 |
| Solyc02g082900.2.1 | Tomato | vacuole | 51.53 | 27.22 |
| AT3G51430.1 | Thale cress | golgi, vacuole | 50.0 | 26.42 |
| AT3G51450.1 | Thale cress | vacuole | 50.0 | 26.42 |
| KRH69688 | Soybean | golgi, vacuole | 48.47 | 25.89 |
| KRH07935 | Soybean | endoplasmic reticulum | 49.49 | 25.66 |
| HORVU1Hr1G052450.8 | Barley | extracellular, golgi, vacuole | 47.96 | 25.54 |
| AT3G51420.1 | Thale cress | golgi, vacuole | 47.96 | 25.41 |
| TraesCS1D01G207200.2 | Wheat | extracellular, golgi, vacuole | 47.45 | 25.34 |
| CDY16306 | Canola | golgi, vacuole | 45.92 | 25.21 |
| CDY33280 | Canola | golgi, vacuole | 47.45 | 25.14 |
| CDY16307 | Canola | golgi, vacuole | 47.45 | 25.14 |
| TraesCS1B01G217600.1 | Wheat | extracellular, golgi, vacuole | 46.94 | 25.07 |
| CDY33279 | Canola | golgi, vacuole | 46.94 | 24.8 |
| Bra038899.1-P | Field mustard | golgi, vacuole | 46.94 | 24.8 |
| AT3G51440.1 | Thale cress | golgi, vacuole | 46.94 | 24.8 |
| CDX73720 | Canola | golgi, vacuole | 46.94 | 24.73 |
| KRH69689 | Soybean | plastid | 47.45 | 23.48 |
| VIT_17s0000g04580.t01 | Wine grape | extracellular, vacuole | 21.43 | 23.2 |
| Bra036798.1-P | Field mustard | vacuole | 48.47 | 22.95 |
| Bra038898.1-P | Field mustard | golgi, vacuole | 46.43 | 22.92 |
| CDX78005 | Canola | vacuole | 47.96 | 22.71 |
| OQU92210 | Sorghum | golgi, plastid, vacuole | 47.96 | 21.22 |
| VIT_04s0210g00030.t01 | Wine grape | vacuole | 70.41 | 17.85 |
| Os10t0543500-01 | Rice | plasma membrane | 22.96 | 17.65 |
| VIT_10s0042g00030.t01 | Wine grape | vacuole | 23.98 | 17.22 |
| VIT_13s0074g00070.t01 | Wine grape | vacuole | 23.47 | 16.79 |
| VIT_11s0016g00860.t01 | Wine grape | golgi, vacuole | 30.1 | 16.16 |
| VIT_10s0071g00020.t01 | Wine grape | vacuole | 24.49 | 15.53 |
| VIT_11s0016g00880.t01 | Wine grape | plastid | 28.57 | 15.22 |
| VIT_00s0575g00010.t01 | Wine grape | vacuole | 23.98 | 15.06 |
| VIT_10s0042g00010.t01 | Wine grape | vacuole | 23.98 | 14.92 |
| TraesCS1A01G203800.1 | Wheat | cytosol, plastid, vacuole | 18.37 | 14.75 |
| VIT_10s0042g00020.t01 | Wine grape | vacuole | 23.98 | 14.6 |
| VIT_00s0575g00020.t01 | Wine grape | vacuole | 23.47 | 14.29 |
| VIT_10s0042g00050.t01 | Wine grape | vacuole | 23.47 | 14.29 |
| VIT_10s0071g00010.t01 | Wine grape | vacuole | 22.96 | 13.98 |
| VIT_13s0074g00080.t01 | Wine grape | vacuole | 22.96 | 13.98 |
| VIT_17s0000g04600.t01 | Wine grape | vacuole | 23.98 | 13.7 |
| VIT_06s0009g00850.t01 | Wine grape | cytosol | 24.49 | 13.68 |
| VIT_08s0007g05370.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 23.98 | 12.7 |
| VIT_08s0007g05360.t01 | Wine grape | vacuole | 24.49 | 12.7 |
| VIT_10s0071g00250.t01 | Wine grape | vacuole | 21.94 | 12.65 |
| VIT_17s0000g04610.t01 | Wine grape | vacuole | 22.96 | 12.26 |
| VIT_11s0016g00870.t01 | Wine grape | plasma membrane, vacuole | 28.06 | 11.93 |
| VIT_05s0102g00880.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 23.47 | 11.33 |
| VIT_17s0000g04590.t01 | Wine grape | endoplasmic reticulum, peroxisome, vacuole | 21.43 | 9.27 |
| VIT_04s0210g00100.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.120.10.30 | MapMan:50.4.3 | InterPro:6-blade_b-propeller_TolB-like | ProteinID:CBI38403 | ProteinID:CBI38403.3 | UniProt:D7U6N3 |
| EMBL:FN596531 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016020 |
| GO:GO:0016787 | GO:GO:0016788 | GO:GO:0016844 | InterPro:IPR011042 | PFAM:PF03088 | PANTHER:PTHR10426 |
| PANTHER:PTHR10426:SF58 | SUPFAM:SSF63829 | SignalP:SignalP-TM | InterPro:Strictosidine_synth_cons-reg | InterPro:Strictosidine_synthase | TMHMM:TMhelix |
| UniParc:UPI0001BE5183 | ArrayExpress:VIT_04s0210g00090 | EnsemblPlantsGene:VIT_04s0210g00090 | EnsemblPlants:VIT_04s0210g00090.t01 | SEG:seg | : |
Description
No Description!
Coordinates
chr4:+:20474492..20475611
Molecular Weight (calculated)
21384.8 Da
IEP (calculated)
4.656
GRAVY (calculated)
0.043
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPTPSQSS MARRSSSWPL GLLTLILAPV AAAMLLYQLD PYDPAPVPIH EFSQQPMVVP KLNSRMLQGS EMIGVGKLLG PEDIAYHPDS HLIYTGCADG
101: WVKRVTLNDS VVQNWAFTGG RPLGVALGRH GQLIVADAEK GLLEVTTDGM VKTLTDEAEG IKFKLTDGVD VAVDGVIYFT DASYKYSLKE YIWDIF
101: WVKRVTLNDS VVQNWAFTGG RPLGVALGRH GQLIVADAEK GLLEVTTDGM VKTLTDEAEG IKFKLTDGVD VAVDGVIYFT DASYKYSLKE YIWDIF
001: MVLFFSTRFL FFSIFFPCLI SITLYQLDSF EPASLPADSL ITSPTSIPPL LNDRFLTGAE FIGVGLLNNP EDIAYHKDSN LIYTGCVDGW VKRVSVHDSA
101: NDSIVEDWVN TGGRPLGIAF GLHGEVIVAD ANKGLLSISD GGKKTELLTD EADGVRFKLT DAVTVADNGV LYFTDASSKY DFYQFIFDFL EGKPHGRVMS
201: FDPTTRATRV LLKDLYFANG ISMSPDQTHF VFCETIMRRC SKYYISEERV EVFIQGLPGY PDNIRYDGDG HYWIALISEV TTSWKLSMKY LFLRKLIYMA
301: AKYGVELLSI KNAAVLQVDL DGNPIAMYHD HPFSHITSGV KIGNHLYFGS LLHSYITRLD LLKYPAQKKL
101: NDSIVEDWVN TGGRPLGIAF GLHGEVIVAD ANKGLLSISD GGKKTELLTD EADGVRFKLT DAVTVADNGV LYFTDASSKY DFYQFIFDFL EGKPHGRVMS
201: FDPTTRATRV LLKDLYFANG ISMSPDQTHF VFCETIMRRC SKYYISEERV EVFIQGLPGY PDNIRYDGDG HYWIALISEV TTSWKLSMKY LFLRKLIYMA
301: AKYGVELLSI KNAAVLQVDL DGNPIAMYHD HPFSHITSGV KIGNHLYFGS LLHSYITRLD LLKYPAQKKL
Arabidopsis Description
SSL4SSL4 [Source:UniProtKB/TrEMBL;Acc:A0A178VDG6]
SUBAcon: [golgi,vacuole]
SUBAcon: [golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.