Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- vacuole 3
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0010g03800.t01 | |
| VIT_09s0002g03770.t01 | |
| VIT_10s0003g01830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G51450.1 | VIT_01s0010g03800.t01 | AT1G27300.1 | 21798944 |
| AT3G51450.1 | VIT_09s0002g03770.t01 | AT3G16310.1 | 21798944 |
| AT3G51450.1 | VIT_10s0003g01830.t01 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0210g00090.t01 | Wine grape | mitochondrion, vacuole | 38.67 | 73.98 |
| VIT_04s0210g00130.t01 | Wine grape | plasma membrane, vacuole | 47.47 | 62.24 |
| VIT_04s0210g00050.t01 | Wine grape | plastid | 57.33 | 51.56 |
| VIT_04s0210g00080.t01 | Wine grape | vacuole | 50.13 | 49.6 |
| VIT_04s0210g00120.t01 | Wine grape | vacuole | 50.13 | 49.6 |
| GSMUA_AchrUn_... | Banana | plastid | 32.27 | 48.4 |
| VIT_04s0210g00060.t01 | Wine grape | cytosol, mitochondrion | 29.6 | 41.26 |
| PGSC0003DMT400003995 | Potato | golgi, vacuole | 38.67 | 38.77 |
| Solyc02g082900.2.1 | Tomato | vacuole | 37.6 | 38.01 |
| AT3G51420.1 | Thale cress | golgi, vacuole | 36.27 | 36.76 |
| CDY16307 | Canola | golgi, vacuole | 35.73 | 36.22 |
| CDY33280 | Canola | golgi, vacuole | 35.47 | 35.95 |
| AT3G51430.1 | Thale cress | golgi, vacuole | 35.2 | 35.58 |
| AT3G51440.1 | Thale cress | golgi, vacuole | 35.2 | 35.58 |
| AT3G51450.1 | Thale cress | vacuole | 35.2 | 35.58 |
| CDX73720 | Canola | golgi, vacuole | 34.93 | 35.22 |
| CDY33279 | Canola | golgi, vacuole | 34.4 | 34.77 |
| Bra038899.1-P | Field mustard | golgi, vacuole | 34.4 | 34.77 |
| TraesCS1B01G217600.1 | Wheat | extracellular, golgi, vacuole | 33.6 | 34.33 |
| HORVU1Hr1G052450.8 | Barley | extracellular, golgi, vacuole | 33.6 | 34.24 |
| TraesCS1D01G207200.2 | Wheat | extracellular, golgi, vacuole | 33.33 | 34.06 |
| KRH69688 | Soybean | golgi, vacuole | 33.07 | 33.79 |
| KRH07935 | Soybean | endoplasmic reticulum | 33.87 | 33.6 |
| CDY16306 | Canola | golgi, vacuole | 31.73 | 33.33 |
| Bra038898.1-P | Field mustard | golgi, vacuole | 34.13 | 32.24 |
| CDX78005 | Canola | vacuole | 35.47 | 32.13 |
| Bra036798.1-P | Field mustard | vacuole | 35.47 | 32.13 |
| OQU92210 | Sorghum | golgi, plastid, vacuole | 37.07 | 31.38 |
| Os10t0543500-01 | Rice | plasma membrane | 20.8 | 30.59 |
| VIT_04s0210g00030.t01 | Wine grape | vacuole | 62.13 | 30.14 |
| KRH69689 | Soybean | plastid | 31.47 | 29.8 |
| TraesCS1A01G203800.1 | Wheat | cytosol, plastid, vacuole | 18.13 | 27.87 |
| VIT_13s0074g00070.t01 | Wine grape | vacuole | 17.87 | 24.45 |
| VIT_17s0000g04580.t01 | Wine grape | extracellular, vacuole | 11.47 | 23.76 |
| VIT_10s0042g00030.t01 | Wine grape | vacuole | 17.07 | 23.44 |
| VIT_11s0016g00860.t01 | Wine grape | golgi, vacuole | 22.4 | 23.01 |
| VIT_10s0071g00020.t01 | Wine grape | vacuole | 18.67 | 22.65 |
| VIT_00s0575g00010.t01 | Wine grape | vacuole | 18.4 | 22.12 |
| VIT_10s0042g00010.t01 | Wine grape | vacuole | 18.4 | 21.9 |
| VIT_11s0016g00880.t01 | Wine grape | plastid | 21.33 | 21.74 |
| VIT_13s0074g00080.t01 | Wine grape | vacuole | 18.13 | 21.12 |
| VIT_10s0042g00020.t01 | Wine grape | vacuole | 18.13 | 21.12 |
| VIT_00s0575g00020.t01 | Wine grape | vacuole | 18.13 | 21.12 |
| VIT_10s0042g00050.t01 | Wine grape | vacuole | 17.87 | 20.81 |
| VIT_04s0210g00100.t01 | Wine grape | cytosol | 9.6 | 20.57 |
| VIT_10s0071g00010.t01 | Wine grape | vacuole | 17.6 | 20.5 |
| VIT_06s0009g00850.t01 | Wine grape | cytosol | 18.93 | 20.23 |
| VIT_17s0000g04600.t01 | Wine grape | vacuole | 17.87 | 19.53 |
| VIT_10s0071g00250.t01 | Wine grape | vacuole | 17.07 | 18.82 |
| VIT_17s0000g04610.t01 | Wine grape | vacuole | 18.13 | 18.53 |
| VIT_08s0007g05370.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 18.13 | 18.38 |
| VIT_11s0016g00870.t01 | Wine grape | plasma membrane, vacuole | 22.13 | 18.0 |
| VIT_08s0007g05360.t01 | Wine grape | vacuole | 17.33 | 17.2 |
| VIT_05s0102g00880.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 17.07 | 15.76 |
| VIT_17s0000g04590.t01 | Wine grape | endoplasmic reticulum, peroxisome, vacuole | 16.0 | 13.24 |
Protein Annotations
| Gene3D:2.120.10.30 | Gene3D:3.40.50.10810 | MapMan:50.4.3 | InterPro:6-blade_b-propeller_TolB-like | ProteinID:CCB61037 | ProteinID:CCB61037.1 |
| UniProt:F6I270 | EMBL:FN596531 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 |
| GO:GO:0016788 | GO:GO:0016844 | InterPro:IPR011042 | InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 |
| PFAM:PF03088 | PANTHER:PTHR10426 | PANTHER:PTHR10426:SF58 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 |
| SUPFAM:SSF63829 | InterPro:Strictosidine_synth_cons-reg | InterPro:Strictosidine_synthase | TMHMM:TMhelix | UniParc:UPI000210A812 | ArrayExpress:VIT_04s0210g00040 |
| EnsemblPlantsGene:VIT_04s0210g00040 | EnsemblPlants:VIT_04s0210g00040.t01 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4:+:20426687..20445124
Molecular Weight (calculated)
41437.0 Da
IEP (calculated)
5.367
GRAVY (calculated)
0.143
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFSDNIFYE GHQIWNPNAK VIMLCKQLQI VHHVIMTGAP IQNKLAELWS LFDFVFLGKL GVLPVFEAEV AVPISVAGYA NASPLQTHRV TDGRVKPSDT
101: STTRRSSSWS FGFLVLILTP VAAAIFLYQL DSFDPASLPT HEFSQEPMPV PKLNPRMLQG SEMIGQGNLL GPEDIAYDAN SHLIYTGCAD GWVKRVTLNE
201: SAANSVVHNW AFTGGRPLGV ALGRVGEVLV ADAEKGLLEI SGDGVMKLLT DEAEGLKFKQ TNAVDVAVDG MIYFTDASYK YGLIEFIWEI LEVRPHGRLL
301: SFDPSTQETI VLLRDLYLAN GVVVSPDQTS VVFCETLMGL KVFGTWHSSI LQFEKLWQSW RGTLEGHISR KMVGF
101: STTRRSSSWS FGFLVLILTP VAAAIFLYQL DSFDPASLPT HEFSQEPMPV PKLNPRMLQG SEMIGQGNLL GPEDIAYDAN SHLIYTGCAD GWVKRVTLNE
201: SAANSVVHNW AFTGGRPLGV ALGRVGEVLV ADAEKGLLEI SGDGVMKLLT DEAEGLKFKQ TNAVDVAVDG MIYFTDASYK YGLIEFIWEI LEVRPHGRLL
301: SFDPSTQETI VLLRDLYLAN GVVVSPDQTS VVFCETLMGL KVFGTWHSSI LQFEKLWQSW RGTLEGHISR KMVGF
001: MVLFFSTRFL FFSIFFPCLI SITLYQLDSF EPASLPADSL ITSPTSIPPL LNDRFLTGAE FIGVGLLNNP EDIAYHKDSN LIYTGCVDGW VKRVSVHDSA
101: NDSIVEDWVN TGGRPLGIAF GLHGEVIVAD ANKGLLSISD GGKKTELLTD EADGVRFKLT DAVTVADNGV LYFTDASSKY DFYQFIFDFL EGKPHGRVMS
201: FDPTTRATRV LLKDLYFANG ISMSPDQTHF VFCETIMRRC SKYYISEERV EVFIQGLPGY PDNIRYDGDG HYWIALISEV TTSWKLSMKY LFLRKLIYMA
301: AKYGVELLSI KNAAVLQVDL DGNPIAMYHD HPFSHITSGV KIGNHLYFGS LLHSYITRLD LLKYPAQKKL
101: NDSIVEDWVN TGGRPLGIAF GLHGEVIVAD ANKGLLSISD GGKKTELLTD EADGVRFKLT DAVTVADNGV LYFTDASSKY DFYQFIFDFL EGKPHGRVMS
201: FDPTTRATRV LLKDLYFANG ISMSPDQTHF VFCETIMRRC SKYYISEERV EVFIQGLPGY PDNIRYDGDG HYWIALISEV TTSWKLSMKY LFLRKLIYMA
301: AKYGVELLSI KNAAVLQVDL DGNPIAMYHD HPFSHITSGV KIGNHLYFGS LLHSYITRLD LLKYPAQKKL
Arabidopsis Description
SSL4SSL4 [Source:UniProtKB/TrEMBL;Acc:A0A178VDG6]
SUBAcon: [golgi,vacuole]
SUBAcon: [golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.