Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 3
- plasma membrane 1
- golgi 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0200500-01 | |
| Os02t0509600-01 | |
| Os05t0520100-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G51450.1 | Os02t0509600-01 | AT1G27300.1 | 21798944 |
| AT3G51450.1 | Os01t0200500-01 | AT3G16310.1 | 21798944 |
| AT3G51450.1 | Os05t0520100-00 | AT3G16310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G203800.1 | Wheat | cytosol, plastid, vacuole | 71.76 | 75.0 |
| VIT_04s0210g00060.t01 | Wine grape | cytosol, mitochondrion | 56.08 | 53.16 |
| TraesCS1B01G217600.1 | Wheat | extracellular, golgi, vacuole | 75.69 | 52.59 |
| TraesCS1D01G207200.2 | Wheat | extracellular, golgi, vacuole | 75.69 | 52.59 |
| HORVU1Hr1G052450.8 | Barley | extracellular, golgi, vacuole | 74.9 | 51.9 |
| VIT_04s0210g00100.t01 | Wine grape | cytosol | 33.73 | 49.14 |
| OQU92210 | Sorghum | golgi, plastid, vacuole | 75.29 | 43.34 |
| VIT_04s0210g00120.t01 | Wine grape | vacuole | 57.25 | 38.52 |
| VIT_04s0210g00080.t01 | Wine grape | vacuole | 56.86 | 38.26 |
| CDX73720 | Canola | golgi, vacuole | 52.16 | 35.75 |
| CDY16307 | Canola | golgi, vacuole | 51.76 | 35.68 |
| CDY33280 | Canola | golgi, vacuole | 51.76 | 35.68 |
| AT3G51430.1 | Thale cress | golgi, vacuole | 51.37 | 35.31 |
| AT3G51440.1 | Thale cress | golgi, vacuole | 51.37 | 35.31 |
| AT3G51420.1 | Thale cress | golgi, vacuole | 50.59 | 34.86 |
| AT3G51450.1 | Thale cress | vacuole | 50.2 | 34.5 |
| PGSC0003DMT400003995 | Potato | golgi, vacuole | 50.2 | 34.22 |
| KRH69688 | Soybean | golgi, vacuole | 49.02 | 34.06 |
| CDY33279 | Canola | golgi, vacuole | 49.41 | 33.96 |
| Bra038899.1-P | Field mustard | golgi, vacuole | 49.41 | 33.96 |
| Solyc02g082900.2.1 | Tomato | vacuole | 49.02 | 33.69 |
| KRH07935 | Soybean | endoplasmic reticulum | 49.8 | 33.6 |
| VIT_04s0210g00050.t01 | Wine grape | plastid | 54.12 | 33.09 |
| CDY16306 | Canola | golgi, vacuole | 44.71 | 31.93 |
| KRH69689 | Soybean | plastid | 49.41 | 31.82 |
| Bra038898.1-P | Field mustard | golgi, vacuole | 49.02 | 31.49 |
| VIT_04s0210g00130.t01 | Wine grape | plasma membrane, vacuole | 34.9 | 31.12 |
| CDX78005 | Canola | vacuole | 50.2 | 30.92 |
| Bra036798.1-P | Field mustard | vacuole | 49.02 | 30.19 |
| GSMUA_AchrUn_... | Banana | plastid | 29.02 | 29.6 |
| Os07t0614000-02 | Rice | vacuole | 37.25 | 25.89 |
| VIT_04s0210g00090.t01 | Wine grape | mitochondrion, vacuole | 17.65 | 22.96 |
| Os03t0750700-01 | Rice | plasma membrane | 35.69 | 22.81 |
| Os01t0698200-00 | Rice | mitochondrion | 25.1 | 22.07 |
| Os07t0543600-00 | Rice | golgi, vacuole | 29.8 | 21.71 |
| Os06t0623700-01 | Rice | golgi, vacuole | 29.02 | 21.14 |
| VIT_04s0210g00040.t01 | Wine grape | cytosol, peroxisome, vacuole | 30.59 | 20.8 |
| Os08t0442200-01 | Rice | extracellular | 28.24 | 20.57 |
| Os08t0175000-00 | Rice | golgi, mitochondrion, vacuole | 27.84 | 19.94 |
| Os09t0374900-00 | Rice | cytosol, golgi, plastid, vacuole | 28.24 | 18.85 |
| Os03t0263600-01 | Rice | cytosol, golgi, mitochondrion, vacuole | 30.2 | 18.03 |
| Os12t0138800-01 | Rice | golgi, mitochondrion, plasma membrane, vacuole | 29.02 | 17.21 |
| VIT_04s0210g00030.t01 | Wine grape | vacuole | 51.76 | 17.08 |
| Os11t0142400-01 | Rice | extracellular | 0.0 | 0.0 |
| Os11t0142300-00 | Rice | extracellular, plasma membrane | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.120.10.30 | MapMan:50.4.3 | InterPro:6-blade_b-propeller_TolB-like | ProteinID:BAF27112.1 | ProteinID:BAT11884.1 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0016788 |
| GO:GO:0016844 | InterPro:IPR011042 | EnsemblPlantsGene:Os10g0543500 | EnsemblPlants:Os10t0543500-01 | PFAM:PF03088 | PANTHER:PTHR10426 |
| PANTHER:PTHR10426:SF58 | UniProt:Q0IW03 | SUPFAM:SSF63829 | InterPro:Strictosidine_synth_cons-reg | InterPro:Strictosidine_synthase | UniParc:UPI0000DD9A61 |
Description
Six-bladed beta-propeller, TolB-like domain containing protein. (Os10t0543500-01)
Coordinates
chr10:+:21224757..21226937
Molecular Weight (calculated)
27816.2 Da
IEP (calculated)
5.351
GRAVY (calculated)
-0.043
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: LTADGGLVVA DADIGLLKVS PDKAVELLTD EAEGVKFALT DGVDVAGDGV IYFTDASHKH SLAEFMVDVL EARPHGRLMS FDPSTRRTTV LARGLYFANG
101: VAVSPDQDSL VFCETVMRRC SRYHINGDKA GTVDKFIGDL PGFPDNIRYD GEGRYWIAIS AGRTLQWDVL TRSPFVRKLV YMVDRFVVAV PHNLKNAGAM
201: SVTLAGEPVS MYSDPGLALT TGWLKVGDYL YYGSLTKPYL SRIDLAKSPA EKAQE
101: VAVSPDQDSL VFCETVMRRC SRYHINGDKA GTVDKFIGDL PGFPDNIRYD GEGRYWIAIS AGRTLQWDVL TRSPFVRKLV YMVDRFVVAV PHNLKNAGAM
201: SVTLAGEPVS MYSDPGLALT TGWLKVGDYL YYGSLTKPYL SRIDLAKSPA EKAQE
001: MVLFFSTRFL FFSIFFPCLI SITLYQLDSF EPASLPADSL ITSPTSIPPL LNDRFLTGAE FIGVGLLNNP EDIAYHKDSN LIYTGCVDGW VKRVSVHDSA
101: NDSIVEDWVN TGGRPLGIAF GLHGEVIVAD ANKGLLSISD GGKKTELLTD EADGVRFKLT DAVTVADNGV LYFTDASSKY DFYQFIFDFL EGKPHGRVMS
201: FDPTTRATRV LLKDLYFANG ISMSPDQTHF VFCETIMRRC SKYYISEERV EVFIQGLPGY PDNIRYDGDG HYWIALISEV TTSWKLSMKY LFLRKLIYMA
301: AKYGVELLSI KNAAVLQVDL DGNPIAMYHD HPFSHITSGV KIGNHLYFGS LLHSYITRLD LLKYPAQKKL
101: NDSIVEDWVN TGGRPLGIAF GLHGEVIVAD ANKGLLSISD GGKKTELLTD EADGVRFKLT DAVTVADNGV LYFTDASSKY DFYQFIFDFL EGKPHGRVMS
201: FDPTTRATRV LLKDLYFANG ISMSPDQTHF VFCETIMRRC SKYYISEERV EVFIQGLPGY PDNIRYDGDG HYWIALISEV TTSWKLSMKY LFLRKLIYMA
301: AKYGVELLSI KNAAVLQVDL DGNPIAMYHD HPFSHITSGV KIGNHLYFGS LLHSYITRLD LLKYPAQKKL
Arabidopsis Description
SSL4SSL4 [Source:UniProtKB/TrEMBL;Acc:A0A178VDG6]
SUBAcon: [golgi,vacuole]
SUBAcon: [golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.