Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 8
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
plastid: 27992503 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G114720.1 | Barley | plastid | 42.86 | 90.0 |
| TraesCS5A01G390200.1 | Wheat | golgi | 86.72 | 86.93 |
| HORVU5Hr1G095260.1 | Barley | extracellular | 86.72 | 86.72 |
| TraesCS5B01G395100.1 | Wheat | vacuole | 86.72 | 86.72 |
| TraesCS5D01G400000.1 | Wheat | golgi | 86.22 | 86.43 |
| EER90869 | Sorghum | vacuole | 85.96 | 86.18 |
| HORVU5Hr1G114800.1 | Barley | extracellular | 44.11 | 81.86 |
| GSMUA_Achr3P30810_001 | Banana | endoplasmic reticulum, vacuole | 68.17 | 69.92 |
| VIT_06s0009g00850.t01 | Wine grape | cytosol | 59.9 | 68.09 |
| Solyc06g073910.2.1 | Tomato | cytosol, plasma membrane, vacuole | 49.62 | 65.13 |
| CDX92388 | Canola | vacuole | 58.15 | 63.39 |
| Zm00001d034032_P001 | Maize | plasma membrane | 85.21 | 63.08 |
| CDY16615 | Canola | endoplasmic reticulum, extracellular, vacuole | 62.41 | 63.04 |
| Bra018623.1-P | Field mustard | cytosol | 55.14 | 62.68 |
| Bra002383.1-P | Field mustard | vacuole | 61.9 | 62.53 |
| AT5G22020.2 | Thale cress | vacuole | 61.65 | 62.28 |
| PGSC0003DMT400015199 | Potato | vacuole | 60.9 | 62.15 |
| Solyc11g071800.1.1 | Tomato | plastid, vacuole | 59.9 | 61.13 |
| PGSC0003DMT400007732 | Potato | vacuole | 59.65 | 60.87 |
| HORVU6Hr1G025030.1 | Barley | cytosol | 16.79 | 60.36 |
| AT1G08470.1 | Thale cress | endoplasmic reticulum, vacuole | 57.89 | 59.23 |
| CDX93560 | Canola | vacuole | 57.39 | 58.27 |
| CDX95058 | Canola | vacuole | 54.39 | 58.02 |
| KRH26734 | Soybean | vacuole | 52.13 | 56.99 |
| KRH56180 | Soybean | endoplasmic reticulum | 60.4 | 54.65 |
| KRH22599 | Soybean | vacuole | 49.62 | 51.43 |
| Os07t0543600-00 | Rice | golgi, vacuole | 35.59 | 40.57 |
| Os01t0698200-00 | Rice | mitochondrion | 29.07 | 40.0 |
| Os03t0263600-01 | Rice | cytosol, golgi, mitochondrion, vacuole | 42.61 | 39.81 |
| Os08t0175000-00 | Rice | golgi, mitochondrion, vacuole | 35.09 | 39.33 |
| Os08t0442200-01 | Rice | extracellular | 34.34 | 39.14 |
| Os06t0623700-01 | Rice | golgi, vacuole | 33.08 | 37.71 |
| Os09t0374900-00 | Rice | cytosol, golgi, plastid, vacuole | 34.34 | 35.86 |
| Os10t0543500-01 | Rice | plasma membrane | 22.81 | 35.69 |
| Os11t0142400-01 | Rice | extracellular | 7.77 | 34.07 |
| Os11t0142300-00 | Rice | extracellular, plasma membrane | 9.27 | 33.04 |
| Os12t0138800-01 | Rice | golgi, mitochondrion, plasma membrane, vacuole | 35.34 | 32.79 |
| Os07t0614000-02 | Rice | vacuole | 27.82 | 30.25 |
Protein Annotations
| Gene3D:2.120.10.30 | MapMan:50.4.3 | InterPro:6-blade_b-propeller_TolB-like | ProteinID:BAF13200.2 | ProteinID:BAS86406.1 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 |
| GO:GO:0016788 | GO:GO:0016844 | InterPro:IPR011042 | EnsemblPlantsGene:Os03g0750700 | EnsemblPlants:Os03t0750700-01 | PFAM:PF03088 |
| PANTHER:PTHR10426 | PANTHER:PTHR10426:SF24 | UniProt:Q0DNI8 | SUPFAM:SSF63829 | SignalP:SignalP-noTM | InterPro:Strictosidine_synth_cons-reg |
| InterPro:Strictosidine_synthase | TMHMM:TMhelix | UniParc:UPI0001B665DE | SEG:seg | : | : |
Description
Six-bladed beta-propeller, TolB-like domain containing protein. (Os03t0750700-01)
Coordinates
chr3:-:30927374..30929678
Molecular Weight (calculated)
44298.0 Da
IEP (calculated)
7.101
GRAVY (calculated)
-0.141
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPAVVAFA VAVAVAALAA FCGTDPLRTG SMVDFPGFVP HVVELPDASE MPPHADTRER LRGAEIRFRG EVQGPESVAF DPLGRGPYTG VADGRVVRWD
101: GARWVYFAHS SPNWTAELCG HKASPLDYLK DEHICGRALG LRFDRRTGDL YIADAYFGLL KVGPDGGLAT PLATEAEGVR FNFTNDLDLD DDGNVYFTDS
201: SIHYQRRHFM QLVFSGDPSG RLLKYDPNTK KATVLHRNIQ FPNGVSMSKD GLFFVFCEGS RGRLSRYWLK GEKAGTVDLF AILPGFPDNV RTNDKGEFWV
301: AIHCRRSIYA RMVSRNVRLR KFLLSLPIPA KYHYLMQIGG KLHALIIKYN PEGEVLDILE DTTGQVVRAV SEVEEKDGKL WIGSVLMPFI AVFDYANAS
101: GARWVYFAHS SPNWTAELCG HKASPLDYLK DEHICGRALG LRFDRRTGDL YIADAYFGLL KVGPDGGLAT PLATEAEGVR FNFTNDLDLD DDGNVYFTDS
201: SIHYQRRHFM QLVFSGDPSG RLLKYDPNTK KATVLHRNIQ FPNGVSMSKD GLFFVFCEGS RGRLSRYWLK GEKAGTVDLF AILPGFPDNV RTNDKGEFWV
301: AIHCRRSIYA RMVSRNVRLR KFLLSLPIPA KYHYLMQIGG KLHALIIKYN PEGEVLDILE DTTGQVVRAV SEVEEKDGKL WIGSVLMPFI AVFDYANAS
001: MALFLSPKTI TLLFFSLSLA LYCSIDPFHH CAISDFPNFV SHEVISPRPD EVPWERDSQN SLQKSKILFF NQIQGPESVA FDSLGRGPYT GVADGRVLFW
101: DGEKWIDFAY TSSNRSEICD PKPSALSYLR NEHICGRPLG LRFDKRTGDL YIADAYMGLL KVGPEGGLAT PLVTEAEGVP LGFTNDLDIA DDGTVYFTDS
201: SISYQRRNFL QLVFSGDNTG RVLKYDPVAK KAVVLVSNLQ FPNGVSISRD GSFFVFCEGD IGSLRRYWLK GEKAGTTDVF AYLPGHPDNV RTNQKGEFWV
301: ALHCRRNYYS YLMARYPKLR MFILRLPITA RTHYSFQIGL RPHGLVVKYS PEGKLMHVLE DSEGKVVRSV SEVEEKDGKL WMGSVLMNFV AVYDL
101: DGEKWIDFAY TSSNRSEICD PKPSALSYLR NEHICGRPLG LRFDKRTGDL YIADAYMGLL KVGPEGGLAT PLVTEAEGVP LGFTNDLDIA DDGTVYFTDS
201: SISYQRRNFL QLVFSGDNTG RVLKYDPVAK KAVVLVSNLQ FPNGVSISRD GSFFVFCEGD IGSLRRYWLK GEKAGTTDVF AYLPGHPDNV RTNQKGEFWV
301: ALHCRRNYYS YLMARYPKLR MFILRLPITA RTHYSFQIGL RPHGLVVKYS PEGKLMHVLE DSEGKVVRSV SEVEEKDGKL WMGSVLMNFV AVYDL
Arabidopsis Description
At5g22020 [Source:UniProtKB/TrEMBL;Acc:Q9C586]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.